PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G426500.1.p
Common NameLOC101784210, SETIT_001242mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 485aa    MW: 51026.1 Da    PI: 6.6998
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G426500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.6e-09289336455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  Seita.5G426500.1.p 289 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 336
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.30E-10283340No hitNo description
SuperFamilySSF474591.44E-16283354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.256285335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16287353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6289336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10291341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MNCGPPDQLP PASAPSCFLN LNWNQSMAAA AAAGDHLDPA LSSMVSSPTS NSMAAAATDG  60
LALHGISPQP QYGGTRLSSP PKLNLSMMGQ FHHYPPPQVG GAGPSGLPIL ENLMPMGHLD  120
QFLADPGFAE RAARLSGFDG RTGGSGYGAV PGQFGLPEAG PVGALKELEL GNGRDESSVS  180
DPASASAEMA LKAPSDGNAK KRKSSGKGKG KDGPGSAAAK DLAKEESSGK RCKSADEGNG  240
AEDNSAKGKA AQSNSENGGK KQGKDTSKPP EPPKDYIHVR ARRGEATDSH SLAERVRREK  300
ISQRMKLLQD LVPGCNKVVG KAVMLDEIIN YVQSLQRQVE FLSMKLATVN PQLDFNNLPN  360
LLPKDIQQSC GPLQNSHFPL ETSGAPLPYL NQTHQGSPLG CSLTNGMDNQ SNMHPLDPAF  420
CQQMNSQHRF LNGVSDAASQ VGTFWQDDLQ SVVHMDIGQN QEIAATSSNS YNGSLQTVHM  480
KMEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G426500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971039.10.0transcription factor bHLH77
TrEMBLK3XH710.0K3XH71_SETIT; Uncharacterized protein
STRINGSi001242m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-63bHLH family protein