PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G423900.1.p | ||||||||
Common Name | LOC101775161, SETIT_000497mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 705aa MW: 74405.4 Da PI: 6.4706 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.2 | 1.7e-19 | 533 | 629 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +kvl++sdv+++gr+vlpkk ae h ++k++ ++ + +ed ++r+W++++++ ++ks++y+l+ ++ eFv++n+L+egDf+v++ ++ Seita.5G423900.1.p 533 QKVLKQSDVGSLGRIVLPKKEAEVHlpELKTRDGISIPMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGEFVRSNELQEGDFIVIY--SD 620 79*************************999***********7778*******99777777777777.********************..55 PP .SEE..EEE CS B3 88 .sefelvvk 95 ++++++++ Seita.5G423900.1.p 621 vKSGKYLIR 629 588877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-27 | 523 | 638 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 1.01E-31 | 530 | 631 | No hit | No description |
SuperFamily | SSF101936 | 3.14E-22 | 531 | 627 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.532 | 532 | 634 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-18 | 532 | 634 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.2E-16 | 533 | 628 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 705 aa Download sequence Send to blast |
MDASAGSPPP HSQENPPEHG GDLGEAPAEE IGGEAGDDFL FAEDTFPSLP DFPCLSSPSS 60 STFSSSSSSN SSSAYTNAAG GAGGGADGAA GERSGPASAG EGFDALDDID QLLDFASLSM 120 PWDSEPTFPE VSMMLEDAMF APPHPVGDGR REGKAVLEGT GGEEACMDAA AAPGEDLPRF 180 FMEWLTSNRE NISAEDLRSI RLRRSTIEAA AARLGGGRHG TMQLLKLILT WVQNHHLQRK 240 RPRDAMEEAA VLHGHGQSQL SSPGVNTGYE FPAGGQDMAA GSGASWMPYQ QPFTPPAYGG 300 DAVYPGAAGQ YPFHQSSSTS SVVVSSQPFS PPAVGDMHAA GGGNMAWPQQ YVPFPGASAG 360 SYPMPPVVAQ PFSPGFGGQY GGAAHPMGPQ RMAGGEASAT KEARKKRMAR QRRLSCLQQQ 420 RSQQLNLAQI QVPVHPQEPS PRSVHSAPVT PSGGGWGFWS PGSQQQVQNP LSKSNSSRAP 480 MQQVPRSPEA PAEGAPPVNP APGARQEESP QRSTASDKRQ GAKSDKNLRY LLQKVLKQSD 540 VGSLGRIVLP KKEAEVHLPE LKTRDGISIP MEDIGTSRVW NMRYRFWPNN KSRMYLLENT 600 GEFVRSNELQ EGDFIVIYSD VKSGKYLIRG VKVRPAHQDQ GNGSSAVGKN KHGSPGPEKA 660 GGSSDDGIVI ADGTNKPDGA CKGRSQQGAR RARHQGAASM AVSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 2e-36 | 528 | 632 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 2e-36 | 528 | 632 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator specifically required for expression of the maturation program in the seed development. Probably potentiates the response to the seed-specific hormone abscisic acid (ABA). May bind to DNA indirectly. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G423900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT060994 | 0.0 | BT060994.1 Zea mays full-length cDNA clone ZM_BFb0082K18 mRNA, complete cds. | |||
GenBank | JX469991 | 0.0 | JX469991.1 Zea mays subsp. mays clone UT3351 ABI3VP1-type transcription factor mRNA, partial cds. | |||
GenBank | MZEREGPRO | 0.0 | M60214.1 Zea mays viviparous-1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971015.1 | 0.0 | regulatory protein viviparous-1 | ||||
Swissprot | P26307 | 0.0 | VIV1_MAIZE; Regulatory protein viviparous-1 | ||||
TrEMBL | K3XF30 | 0.0 | K3XF30_SETIT; Uncharacterized protein | ||||
STRING | Si000497m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7529 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 2e-64 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G423900.1.p |
Entrez Gene | 101775161 |
Publications ? help Back to Top | |||
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