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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G419700.1.p | ||||||||
Common Name | SETIT_004140mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | B3 | ||||||||
Protein Properties | Length: 661aa MW: 72559.3 Da PI: 4.7818 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.1 | 1.6e-13 | 86 | 173 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffkv+ +++ + +p +fa+++ ++ + + led g +W+v+l + ++g ++ GWk+Fv ++ + g+f+vF+ + rs f Seita.5G419700.1.p 86 FFKVM--MGYFSD-DMDIPPPFARTIlDLA--G-SNIYLEDAFGFRWRVRL--CLSDGVLSFGHGWKNFVLDHAVSCGEFLVFRQIARSVF 168 67777..445555.5***********6333..3.37***************..999999*************************9888888 PP ..EEEEE CS B3 91 elvvkvf 97 +v++f Seita.5G419700.1.p 169 --TVQMF 173 ..77766 PP | |||||||
2 | B3 | 32.7 | 1.3e-10 | 591 | 657 | 29 | 97 |
-..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 kk++ k ++l+d+ r W v + + +++ + +GW + +++n+L+egD++ F+l+g+se ++ v ++ Seita.5G419700.1.p 591 KKQGRKVVILKDPCMRLWPVLY--QCTPRFSGFITGWVDICRENNLQEGDTCEFELSGNSELSFQVVLR 657 455667899*************..55665555667**********************999987777666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.492 | 83 | 176 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-18 | 83 | 176 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.8E-20 | 83 | 176 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.89E-16 | 84 | 173 | No hit | No description |
Pfam | PF02362 | 9.1E-11 | 86 | 173 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-12 | 86 | 176 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.348 | 563 | 658 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0022 | 566 | 658 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.21E-11 | 577 | 654 | No hit | No description |
SuperFamily | SSF101936 | 4.51E-14 | 584 | 657 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.4E-9 | 591 | 658 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-12 | 592 | 655 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 661 aa Download sequence Send to blast |
MVELIGGGAL KKEPEEAVVE IDSEEEEAGK VVKRRRRRKK KACDPHQKRA CVDCTKRCAR 60 IHGRAASSSP SPSSSKARPL PAVPSFFKVM MGYFSDDMDI PPPFARTILD LAGSNIYLED 120 AFGFRWRVRL CLSDGVLSFG HGWKNFVLDH AVSCGEFLVF RQIARSVFTV QMFAPSAVER 180 LFLCERNKRQ SRKRKPRQKA SSPSIQTVKT SKNSVENRKK KQRTDHHSDL GPKDCQMPDH 240 VCLDDSDVPN SASEPKCSET SGGLPEVGVA EPQEDSEAPT RHEREGQEVL DGEAEIADDC 300 TIFEEKESEC NARVTEHLVS DATEIELGEG LNLPTNADVI GPLAMMDLNE ENIDDIFLSA 360 DIYEFGTDVC NPEAFSVDLN MEGPITTAQT SGFSCLEDAS QNHHSSMGVG QSYVMPAETL 420 SCSENKEMTD ALETGSGYAC VAVHDIDINE LPATEPSPFA ENSSPPADIE VHSGEFALSG 480 CNQGEQNEGF VRAQTSVKKD KQQDGQGDRQ ASTGQNTAEV ISSGIMLHEH PHLSQNLHQT 540 DKSEGLQSEI FESGGVLALA AACSKFCIAV PAPGQTWLEL PNRLPVIPRT KKQGRKVVIL 600 KDPCMRLWPV LYQCTPRFSG FITGWVDICR ENNLQEGDTC EFELSGNSEL SFQVVLRSLQ 660 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 37 | KRRRRR |
2 | 32 | 40 | KRRRRRKKK |
3 | 34 | 40 | RRRRKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G419700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972298.1 | 0.0 | B3 domain-containing protein Os01g0905400 isoform X1 | ||||
Swissprot | Q5N6V0 | 0.0 | Y1054_ORYSJ; B3 domain-containing protein Os01g0905400 | ||||
TrEMBL | A0A368REZ5 | 0.0 | A0A368REZ5_SETIT; Uncharacterized protein | ||||
STRING | Si004140m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11461 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 4e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G419700.1.p |
Publications ? help Back to Top | |||
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