PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G417500.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 762aa    MW: 87264.7 Da    PI: 5.5474
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G417500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016210232123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC++C + F +  n++rH+  H
  Seita.5G417500.1.p 210 YKCSKCLEEFCTEINYERHLEAH 232
                         9******************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF044241.4E-633131IPR007518Protein of unknown function DUF544
PROSITE profilePS501579.078210237IPR007087Zinc finger, C2H2
PROSITE patternPS000280212232IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MRYTAREMEF MGGSTKVLVC NDRAASALTS LSNWLVLNNK VNFDSREPKF TVAKFMEMHI  60
SRKILNWHKI NVLPTPEIHQ IVQEYFDITE RLRTGIKVNP VAGTAKFEDS REYDFFRILG  120
VPLLHAPAFN EQVFPSLKEQ LEPGQIGILY LNEEFNTICK HNGIVYMLVE DEALHKKNPF  180
ASWKTMVDEK EIFVAGDFSS TRAHINQKVY KCSKCLEEFC TEINYERHLE AHVPTSKAAL  240
NRSWNKDVLA KYWDQISDED ACSILFDGDQ TVEKSHGSPI KPIFENWILG PEFLVTPPEV  300
RDALKQLKQL KRFMEGDRQK PSSDVLLAVL EVGSEGTIFS TNLPEGGFSF VEAGKSQNTT  360
RTMLTYFSLR VEEVLAKKWY TEKTVQANLV MEELLAQYTD PSQELASASI ENVEDLEGKD  420
IASIVSETST SSHVSGDVVH TEEKDEERKL LPADIAHLPE LLGEEYFPNF VSRKTLVRLF  480
TLFNKDVVTA LTRTGRKIAK RLLNYILKAH KAGHCWNGEW NILDIRVRGD GATLIIDKMP  540
VNATKDGIVA DLQKFIVLLC PYYKIEGIKG PAYFDEFHSD VMSLPELKSE KFEIFQKFLA  600
DHMAFLPPAS TSNLLERLFK LCDDVRRQNG HFTYHPLQRL DCLGWTKIGD IMPYHKVFHY  660
DKTIVEPYKD NYWDLLRFVR NFSNHGLQFT QIDGVQSIED PVILDIMVAY DLGKFITKLV  720
LHVLYVFEKP KRLVSTWNAY KTSDDATEEI DEDGTEENEG I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G417500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970949.10.0uncharacterized protein LOC101784064 isoform X1
RefseqXP_022682704.10.0uncharacterized protein LOC101784064 isoform X1
RefseqXP_022682705.10.0uncharacterized protein LOC101784064 isoform X1
TrEMBLA0A368REI90.0A0A368REI9_SETIT; Uncharacterized protein
STRINGSi000408m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.26e-11C2H2-like zinc finger protein