PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G408600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 474aa    MW: 49204 Da    PI: 8.3497
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G408600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-05124146123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C+ Cg+ F++      H+r+H
  Seita.5G408600.1.p 124 FACHVCGRGFNSLKAVDGHMRVH 146
                         78*******************99 PP
2zf-C2H211.50.00093308326119
                         EEETTTTEEESSHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrH 19 
                         y+C+ Cgks+s++  L  H
  Seita.5G408600.1.p 308 YSCKLCGKSYSSHQGLGGH 326
                         99*********99888666 PP
3zf-C2H2140.00015367389123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k+F +   L  H+r+H
  Seita.5G408600.1.p 367 HECQKCHKVFATGVALGGHMRMH 389
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.7E-4122146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.98E-5122150No hitNo description
PfamPF139125.8E-4124146IPR007087Zinc finger, C2H2
SMARTSM003550.0051124146IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.074124151IPR007087Zinc finger, C2H2
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
SuperFamilySSF576671.34E-8306330No hitNo description
PfamPF139128.7E-5307331IPR007087Zinc finger, C2H2
SMARTSM003550.95308330IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201308335IPR007087Zinc finger, C2H2
PROSITE patternPS000280310330IPR007087Zinc finger, C2H2
SuperFamilySSF576671.34E-8362389No hitNo description
Gene3DG3DSA:3.30.160.603.4E-4364389IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.5E-9367390IPR007087Zinc finger, C2H2
SMARTSM003550.024367389IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.803367394IPR007087Zinc finger, C2H2
PROSITE patternPS000280369389IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAGLQRIQPI HSPNRREGDA AAGALSLPAV LREGEYVPGG RDESSDTDGD DDGYRLQRRL  60
EGQLGRGVSW MEVAMASGRP VGVPRPLVAR SSCESDGTIS DDGSNPSADS SAVVSSAEAP  120
ARRFACHVCG RGFNSLKAVD GHMRVHGNGR MAEAAVVGGG WAATGKRGWT GGKPSVAAVC  180
LNSESTDDHS TAVVVAQPIP MAIAVTSSPS STPVLSSTRT NLSGEESSSS ATAQPMDYEA  240
PAVATVVTGP NNPSTGAVVH HQQAAPIPAA EQARPVHQPA VPPPQARPVH QPAVPLPPAS  300
LAQPRRVYSC KLCGKSYSSH QGLGGHAAGH RNRQKEAEAA AAAAEMMMGL GQDGAAFRRG  360
RRAEEPHECQ KCHKVFATGV ALGGHMRMHY TGPPIVHKRN KRRCPAPPPA PAVSEADLRL  420
ALSTVTEERR PSPSPAVAAG RVRLFGIDIG PQVQAPPSKE EEQGSSSSEG EKQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G408600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682476.10.0replication initiator 1-like
TrEMBLA0A368RE690.0A0A368RE69_SETIT; Uncharacterized protein
STRINGSi004885m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.11e-12zinc finger of Arabidopsis thaliana 6