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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.5G396100.1.p |
Common Name | LOC101766950, SETIT_001053mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
C2H2 |
Protein Properties |
Length: 518aa MW: 56732.6 Da PI: 5.846 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.5G396100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 19.8 | 2.2e-06 | 279 | 300 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
C +Cgk F+r nL+ H+r H
Seita.5G396100.1.p 279 FCLICGKGFKRDANLRMHMRGH 300
5*******************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010044 | Biological Process | response to aluminum ion |
GO:0010447 | Biological Process | response to acidic pH |
GO:0005634 | Cellular Component | nucleus |
GO:0003676 | Molecular Function | nucleic acid binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 518 aa
Download sequence Send
to blast |
MEGGMSSLET AMKASSSIAS GTARNAEPDQ HPVCSNSLEQ FYFPRPGQSL PGIPPFFGPP 60 SSSLYLPNDN EAKVGNQFEP NPSQSTDWDP QAIVSNLTFL EQKIKQVKDV VQAMSNRENH 120 VAGGSCELAA KQQLITADLT SIIIQLITTA GSLLPSMKNP LSSNLAVRQL GNTLGSPMGF 180 GMNTNQRPSV DSKTNIPDSG KVSDYEELIN SLNTTQDERD EMIKCPNPCV GEGSEPTPME 240 DHDVKESDDG EHEGENLPPG SYVVLQLEKE EILAPHTHFC LICGKGFKRD ANLRMHMRGH 300 GDEYKTAAAL AKPTKDSGSE HAPVTRYSCP FVGCKRNKEH KKFQPLKTIL CVKNHYKRSH 360 CDKSYTCSRC NTKKFSVIAD LKTHEKHCGR DKWLCSCGTT FSRKDKLFGH VALFQGHTPA 420 LPMDDVKISE ASEQQQGSEP MNEISRSVGC FPCSSSDGIS NLDMKMADDA RGYYSPMSFD 480 PCFGTLDDFT RPGFDISEDP FSFLPSGCSY VQQNGDN*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF184734 | 0.0 | KF184734.1 Saccharum hybrid cultivar R570 clone BAC 170F15 complete sequence. |
GenBank | KF184941 | 0.0 | KF184941.1 Saccharum hybrid cultivar R570 clone BAC 189K21 complete sequence. |