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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Seita.5G391200.1.p |
| Common Name | LOC101780159, SETIT_002586mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
NAC |
| Protein Properties |
Length: 264aa MW: 28428.4 Da PI: 5.6756 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.5G391200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 138.4 | 4.4e-43 | 7 | 140 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvka...eekewyfFskrdkkyatgkrknratksgyWk 84
ppG+rF Pt+eel+++yL++k+++ + ++e+vi+ vd+y+++P +Lp + + e + w+fF++r++++a+g r++r+t sgyWk
Seita.5G391200.1.p 7 PPGYRFYPTEEELICFYLRNKLDSLRDDIERVIPVVDVYSADPGQLPGihamlR--GgagEGEPWFFFCPRQEREARGGRPSRTTPSGYWK 95
8****************************99****************4456551..13336679*************************** PP
NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
a g+ v+s+ +++++g+kkt+vfy+grap+g+kt+W m+eyr+
Seita.5G391200.1.p 96 AAGTPGVVYSSaGRRAIGMKKTMVFYRGRAPSGTKTNWKMNEYRA 140
*********9977888***************************95 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 264 aa
Download sequence Send
to blast |
MAAAGHPPGY RFYPTEEELI CFYLRNKLDS LRDDIERVIP VVDVYSADPG QLPGIHAMLR 60
GGAGEGEPWF FFCPRQEREA RGGRPSRTTP SGYWKAAGTP GVVYSSAGRR AIGMKKTMVF 120
YRGRAPSGTK TNWKMNEYRA LQYYDDAAGG PTDGSSSSTH THAAAPPNVP PPQLRSEFSL 180
CRLYTQSGTL RQFDRRPLGG AGAGAPSEEP GPSTAAAASP PDDDDGSGSS TQQQQLQLAE 240
RGDHDPYGDD VAILDALLYW PGD*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 9e-32 | 1 | 142 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 9e-32 | 1 | 142 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 9e-32 | 1 | 142 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 9e-32 | 1 | 142 | 12 | 144 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 9e-32 | 1 | 142 | 12 | 144 | NAC domain-containing protein 19 |
| 4dul_B | 9e-32 | 1 | 142 | 12 | 144 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK071274 | 1e-133 | AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence. |
