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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.5G389300.2.p |
Common Name | LOC101772577, SETIT_001731mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
bZIP |
Protein Properties |
Length: 410aa MW: 43310.1 Da PI: 6.7857 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.5G389300.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 43.6 | 6.5e-14 | 325 | 372 | 5 | 52 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52
+r+rr++kNRe+A rsR+RK+a++ eLe + L++eN +Lk e +++
Seita.5G389300.2.p 325 RRQRRMIKNRESAARSRARKQAYTVELEAELNHLKEENARLKAEEKTI 372
79****************************************886665 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009409 | Biological Process | response to cold |
GO:0009414 | Biological Process | response to water deprivation |
GO:0009651 | Biological Process | response to salt stress |
GO:0009737 | Biological Process | response to abscisic acid |
GO:0009739 | Biological Process | response to gibberellin |
GO:0010152 | Biological Process | pollen maturation |
GO:0010187 | Biological Process | negative regulation of seed germination |
GO:0010200 | Biological Process | response to chitin |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0048316 | Biological Process | seed development |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 410 aa
Download sequence Send
to blast |
MASEMSKNVK VLDEQEVTSH QRDQGLRARI SGVAAEDQAD PLARQASIMS LTLEELQNSL 60 CEPGRNFGSM NMDEFMANIW NAEEFQAATG GCKEDAEQEA AAAAAAVPTA AVEKGGGSGG 120 LVRQGSYALP PPLSRKTVEE VWAEINQAPG DAQAHPAPQA IVQPQMGSGG LAASGRQVTL 180 GEMTLEDFLV KAGVVRGAFA GGHGQAVGMV PAGPMGHMQQ QGQLAATPMM YQVAPANAAA 240 VYPVMGDGMG YHNGYAGGMA VVPPPPPSQC VAPAVSPGSS DGMSAMTQAE MMSCIGNGGM 300 VRNGGSNARK RDSPEDGCTE KTVERRQRRM IKNRESAARS RARKQAYTVE LEAELNHLKE 360 ENARLKAEEK TILLSKKKML VEKMMEQARE NINAKKGGRG LRRCGSAMW*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that possesses transactivation activity in yeast (PubMed:17604002, PubMed:21055780, PubMed:18236009). Involved in abscisic acid (ABA) signaling pathway. Binds to the G-box motif 5'-CACGTG-3' of TRAB1 gene promoter (PubMed:17604002). Involved in the regulation of pollen maturation. May act as negative regulator of salt stress response (PubMed:18236009). Together with PYL5, PP2C30 and SAPK2, is part of an ABA signaling unit that modulates seed germination and early seedling growth (PubMed:22071266). {ECO:0000269|PubMed:17604002, ECO:0000269|PubMed:18236009, ECO:0000269|PubMed:21055780, ECO:0000269|PubMed:22071266}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by abscisic acid (ABA) (PubMed:21055780, PubMed:18236009, PubMed:22071266). Induced by salt stress. Down-regulated by cold and drought stresses (PubMed:18236009). {ECO:0000269|PubMed:18236009, ECO:0000269|PubMed:21055780, ECO:0000269|PubMed:22071266}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF314701 | 0.0 | KF314701.1 Setaria italica clone SiABRE hypothetical protein mRNA, complete cds. |
Publications
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- Zou M,Guan Y,Ren H,Zhang F,Chen F
A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance. Plant Mol. Biol., 2008. 66(6): p. 675-83 [PMID:18236009] - Kim H, et al.
A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth. J. Exp. Bot., 2012. 63(2): p. 1013-24 [PMID:22071266] - Bhatnagar N, et al.
The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10. Plant Mol. Biol., 2017. 93(4-5): p. 389-401 [PMID:28000033]
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