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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Seita.5G368600.1.p |
| Common Name | LOC101760315, SETIT_004520mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
bHLH |
| Protein Properties |
Length: 225aa MW: 23659.7 Da PI: 6.5033 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.5G368600.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 30.6 | 6.1e-10 | 66 | 106 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
r RR+ri ++f Lr+l+P K++ +++Le+A++Y+k L
Seita.5G368600.1.p 66 ARERRHRISDRFRVLRSLVPGG-----SKMDTVSMLEQAIHYVKFL 106
699*****************95.....5****************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 225 aa
Download sequence Send
to blast |
MDPYHYQAVY DPRGFPMIHP QPYLHHPAAA GALGDSRVRG GGGGGGGGVR RRPGAKLSTD 60
PQSVAARERR HRISDRFRVL RSLVPGGSKM DTVSMLEQAI HYVKFLKAQV SLHQAALMQH 120
EEGCPVELAA AYSAAVAGGA GEVTLASRCR AGACEAEVVQ LQVPLQEAVS YDLAAPQLHG 180
IDPGQISGVH ELPPLPSCVF AEPAAASYSV CDLDEGETDL PGSY*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that seems to regulate organogenesis in postembryonic development. Involved in the regulation of shoot branching by controlling axillary meristem initiation. Functions in association with LAX2 to regulate the process of AM formation. Possesses transactivation activity in yeast (PubMed:21963665). {ECO:0000269|PubMed:13130077, ECO:0000269|PubMed:21963665}. |
| Publications
? help Back to Top |
- Kaur P, et al.
Genes controlling plant growth habit in Leymus (Triticeae): maize barren stalk1 (ba1), rice lax panicle, and wheat tiller inhibition (tin3) genes as possible candidates.
Funct. Integr. Genomics, 2008. 8(4): p. 375-86
[PMID:18543009] - Oikawa T,Kyozuka J
Two-Step Regulation of LAX PANICLE1 Protein Accumulation in Axillary Meristem Formation in Rice.
Plant Cell, 2009. 21(4): p. 1095-108
[PMID:19346465] - Woods DP,Hope CL,Malcomber ST
Phylogenomic analyses of the BARREN STALK1/LAX PANICLE1 (BA1/LAX1) genes and evidence for their roles during axillary meristem development.
Mol. Biol. Evol., 2011. 28(7): p. 2147-59
[PMID:21297156] - Tabuchi H, et al.
LAX PANICLE2 of rice encodes a novel nuclear protein and regulates the formation of axillary meristems.
Plant Cell, 2011. 23(9): p. 3276-87
[PMID:21963665] - Gao ZY, et al.
Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences.
Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14492-7
[PMID:23940322] - Deshpande GM,Ramakrishna K,Chongloi GL,Vijayraghavan U
Functions for rice RFL in vegetative axillary meristem specification and outgrowth.
J. Exp. Bot., 2015. 66(9): p. 2773-84
[PMID:25788736] - Sekhar S, et al.
Spikelet-specific variation in ethylene production and constitutive expression of ethylene receptors and signal transducers during grain filling of compact- and lax-panicle rice (Oryza sativa) cultivars.
J. Plant Physiol., 2015. 179: p. 21-34
[PMID:25817414] - Mohanta TK,Mohanta N,Parida P,Bae H
Mitogen Activated Protein Kinase (MPK) Interacts With Auxin Influx Carrier (OsAux/LAX1) Involved in Auxin Signaling in Plant.
Biol Proced Online, 2015. 17: p. 13
[PMID:26526688] - Sekhar S, et al.
Identification and Characterization of Differentially Expressed Genes in Inferior and Superior Spikelets of Rice Cultivars with Contrasting Panicle-Compactness and Grain-Filling Properties.
PLoS ONE, 2015. 10(12): p. e0145749
[PMID:26710230] - Das K, et al.
Comparative proteomics of the superior and inferior spikelets at the early grain filling stage in rice cultivars contrast for panicle compactness and ethylene evolution.
J. Plant Physiol., 2016. 202: p. 65-74
[PMID:27450495]
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