PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G357400.1.p
Common NameSETIT_004848mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 461aa    MW: 48419.7 Da    PI: 5.0597
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G357400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.93.2e-26241653127
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdk 90 
                         pG+rF Ptd+el+v+yL +k+++++l+++ v++  d y  +P++L  k  ++    wy Fs+rd+kya g +++r +   +g+Wka   +k
  Seita.5G357400.1.p  24 PGVRFAPTDQELIVHYLGRKLRNEPLPTDLVVDGRDAYAEHPKKLVpKLGEGIGGAWYLFSPRDRKYAGGMQPKREMGdgEGRWKAVEAEK 114
                         9***************************8889999**********62443344559*******************76645899******** PP

                 NAM  91 evlsk..kgelvglkktLvfy............kgrapkgektdWvmheyr 127
                          vl    ++e++g k+ L+f+            k  ++k++ t+W m e+ 
  Seita.5G357400.1.p 115 LVLGGadGKEVIGAKRALTFHehshqvdalgkrKRVSSKSKPTKWKMVEFV 165
                         **987778889**********887777776654345566778*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3219195IPR003441NAC domain
PROSITE profilePS5100533.26222195IPR003441NAC domain
PfamPF023651.8E-1624164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MSEESTAEAP GDAAAYHEEY LGVPGVRFAP TDQELIVHYL GRKLRNEPLP TDLVVDGRDA  60
YAEHPKKLVP KLGEGIGGAW YLFSPRDRKY AGGMQPKREM GDGEGRWKAV EAEKLVLGGA  120
DGKEVIGAKR ALTFHEHSHQ VDALGKRKRV SSKSKPTKWK MVEFVSINSS RAARDDTAPD  180
PMLLNEFVLC KITNKSLRAA NPDPAQGDEK EENDDDNGEE EPAPDGGGES QEKHLPEQRP  240
AGGGGAGAQG EQQQPPPGGG AGSHGNRQPA ATEAPSWGHI AALPDDDYRG AKYFVGVDGS  300
NRSGTNRLSV FGSDDHIGAF YGGGAGSHGN RQPATAEAPH GQHMAALPGD DYRGAKYFVG  360
IDASNRSDTN RLSVFGSDDH IGAFFGGGDS LGTQRAGHRQ EASGGGAGSS PDEQQQPTPE  420
APNGGGAAAT GAASQQSDAN LCHWEFCDSA ITFADFVGST *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-172419519165NO APICAL MERISTEM PROTEIN
1ut4_B4e-172419519165NO APICAL MERISTEM PROTEIN
1ut7_A4e-172419519165NO APICAL MERISTEM PROTEIN
1ut7_B4e-172419519165NO APICAL MERISTEM PROTEIN
4dul_A4e-172419519165NAC domain-containing protein 19
4dul_B4e-172419519165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G357400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682895.10.0NAC domain-containing protein 101
TrEMBLK3XSE90.0K3XSE9_SETIT; Uncharacterized protein
STRINGSi004848m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2933733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-23NAC domain containing protein 47