 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Seita.5G348100.1.p |
Common Name | LOC101785948, SETIT_003053mg |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
Family |
ERF |
Protein Properties |
Length: 185aa MW: 19442.8 Da PI: 8.7326 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.5G348100.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 62.2 | 1.2e-19 | 31 | 81 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
+y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+ eAa a+++a++ l+g+
Seita.5G348100.1.p 31 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPVEAALAYDRAARTLRGA 81
6********.**********883....5*************************985 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0016020 | Cellular Component | membrane |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 185 aa
Download sequence Send
to blast |
MDMDPTLGAV LSHGGAGGGA VGGGDGGGDA HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT 60 FDTPVEAALA YDRAARTLRG AKAKTNFPDH AGGGGRHRHQ QQHLHLARPF SRQPLPQAVP 120 FGGVDLDCPS PWHFVYLQPE AADTALPLAA TQPAAAPPPS TALELSTGQT RGGLPFDLNE 180 APSC*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | HG670306 | 2e-83 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |