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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.5G348000.1.p |
Common Name | LOC101785539, SETIT_002729mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
ERF |
Protein Properties |
Length: 242aa MW: 24819 Da PI: 9.5891 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.5G348000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 64.9 | 1.6e-20 | 32 | 83 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
++++GVr ++ +gr++AeIrdp k+ r++lg+++taeeAa+a++aa+++++g+
Seita.5G348000.1.p 32 PHFRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREFRGA 83
689*******.**********83...36*************************985 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 242 aa
Download sequence Send
to blast |
MAPRAADKSP VPPATGLGLG VGGGVGGVGM GPHFRGVRKR PWGRYAAEIR DPAKKSRVWL 60 GTYDTAEEAA RAYDAAAREF RGAKAKTNFP FASQCPVAAG AGSPSSNSTV DSSGGGSACG 120 VQAPMQAMPL PPALDLDLFH RAAAVTAVSS GGMRFPFKGY PVARPTPHPY FFYEQAAAAA 180 AAAAGYRMLK VAPPPVTVAA VAQSDSDSSS VVDHTPSPPP VTTKKEVSFD LDLNWPPPAE 240 N*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF776514 | 0.0 | KF776514.1 Sorghum bicolor genotype Halepense AP2 domain-containing protein (AP37) gene, complete cds. |