PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G343600.1.p
Common NameLOC101769772, SETIT_001165mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 498aa    MW: 51366.4 Da    PI: 9.8355
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G343600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024252274223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +C+ Cg++F  ++ L+ H  + H
  Seita.5G343600.1.p 252 SCHRCGEHFGKWEALEAHHLSkH 274
                         7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280253274IPR007087Zinc finger, C2H2
SuperFamilySSF563992.88E-22276496No hitNo description
Gene3DG3DSA:3.90.228.104.4E-11300473IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MGERRRRGSA TAAAAPGAAA AAARAEEEKA ASAAAAGKAP PPTVWFALKR SLHCRSEPSD  60
VHVPRAKAGP AAVGGGGGNL SSIVTKRAAP RSGCSRSIAN LRDVIHGSKR HPGQPPSCSP  120
RSIGSSEFLN PIAHEVVLST NSRCELKITG FGGCGGLGAV GTAAAHDADG GGGSDGGVVS  180
SFVGTLRPGT PGPAWAGHGL PYSGSMRGGV RCTPPRSPNV LLERNGSLAV GHRASCEDTA  240
KAGAGKGSGG LSCHRCGEHF GKWEALEAHH LSKHAVTELV EGDSSRKIVE IICRTSLLKS  300
ESSCVRIERV FKVHNTQRTL SRFEEYREAV KLKASKLPKK HPRCLADGNE LLRFHGATLS  360
CALGAGSGAS SSLCASDRCA VCRIIRHGFS ARKEGKAGVG VFTTSTSGRA FESIEAPPPA  420
SCGDDGADPA AAPRKALLVC RVIAGRVHKP LENLREFAGQ TGFDSLAGKV GPYSNIEELY  480
LLNPRALLPC FVVICKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G343600.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9725840.0EU972584.1 Zea mays clone 383925 nucleic acid binding protein mRNA, complete cds.
GenBankFM2521260.0FM252126.1 Zea mays mRNA for C2H2 zinc finger protein (mrpi-2 gene), cultivar A69Y.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970210.10.0uncharacterized protein LOC101769772
TrEMBLK3XGZ40.0K3XGZ4_SETIT; Uncharacterized protein
STRINGSi001165m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32772841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-134C2H2 family protein