PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G326100.1.p
Common NameSETIT_004904mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 769aa    MW: 82284.5 Da    PI: 6.6365
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G326100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.9e-2193148156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         r++ +++t+eq++++e++F+++++p++++r++L+++lgL+ rqVk+WFqNrR++ k
  Seita.5G326100.1.p  93 RKSYHRHTAEQIKAMEAVFRESPHPDEKQRQQLSQELGLSARQVKFWFQNRRTQIK 148
                         788999**********************************************9877 PP
2START175.43.5e-552644921206
                         HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
               START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla... 77 
                         ela +a+ el ++ +++ep+Wv+s+    + +++de+ + f++++v        s+ea+r++gvv  ++++lv+ ++d++ qW   ++   
  Seita.5G326100.1.p 264 ELAGRALHELATMCSSGEPLWVRSAetgrDVLDYDEYARLFQRGDVpgdqrpgWSVEASRETGVVYLDTTRLVNAFMDVN-QWMMLFPtmi 353
                         578999**************************************99**********************************.9998888888 PP

                         ....EEEEEEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEEC CS
               START  78 ....kaetlevissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepks 158
                                +++vi+++   g++qlm+ae q l+plvp R+f f+R++++l+a++w+ vdvSvd  ++  +  ss   ++ + pSg+++e+ s
  Seita.5G326100.1.p 354 skaaTLGVIQVIENDdqdGVVQLMFAEVQTLTPLVPtREFNFLRHCKKLTADKWAMVDVSVDDVEPEAQttSSTACKCLKKPSGCVVEEQS 444
                         876655567777787888********************************************999988887999999************** PP

                         TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         ng++kvtwveh+ ++ + +++++rs   sgla+ga++wva+lq qce+
  Seita.5G326100.1.p 445 NGRCKVTWVEHATCRNAAVPSMYRSAAASGLAFGARRWVAALQLQCER 492
                         **********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.59E-2078151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-2380144IPR009057Homeodomain-like
PROSITE profilePS5007118.15590150IPR001356Homeobox domain
SMARTSM003891.5E-1892154IPR001356Homeobox domain
CDDcd000861.95E-1893151No hitNo description
PfamPF000461.7E-1893148IPR001356Homeobox domain
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PROSITE profilePS5084838.84255495IPR002913START domain
SuperFamilySSF559619.42E-28258492No hitNo description
CDDcd088751.86E-92259491No hitNo description
SMARTSM002344.2E-44264492IPR002913START domain
PfamPF018523.2E-45265492IPR002913START domain
Gene3DG3DSA:3.30.530.204.6E-5313475IPR023393START-like domain
SuperFamilySSF559618.63E-9511694No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MGSSRPPPRT QDFFPAPALS LSLAVAFGRN EPAASGGEGV EAGDEGDGGI RLRQGEAAEI  60
SSENTGPGSQ SGGAWSGGEE AAGHGDGGGN KRRKSYHRHT AEQIKAMEAV FRESPHPDEK  120
QRQQLSQELG LSARQVKFWF QNRRTQIKAT QERHENSLLK SEMEKLQEEN RAMRELVKKS  180
PRCPGCGAAA ASTEEQQLRL ENAKLKAEIE RLRGTPGNTT TDAVASPASP SCSAQAIQIK  240
SRSSVEGDVH GGGLLGRDKT SILELAGRAL HELATMCSSG EPLWVRSAET GRDVLDYDEY  300
ARLFQRGDVP GDQRPGWSVE ASRETGVVYL DTTRLVNAFM DVNQWMMLFP TMISKAATLG  360
VIQVIENDDQ DGVVQLMFAE VQTLTPLVPT REFNFLRHCK KLTADKWAMV DVSVDDVEPE  420
AQTTSSTACK CLKKPSGCVV EEQSNGRCKV TWVEHATCRN AAVPSMYRSA AASGLAFGAR  480
RWVAALQLQC ERMVFSVATN IPARDSSGVA TPAGRRSVLK LAHRMTSSLC RVIGGSRDLA  540
WSRPASNRGG GQGDGVRMTS RRNIGDPGEP RGLIACAVLS AWLPVNPAAL FDFLRDESRR  600
HEWDVMLPPG RPVQSCASVA KGKDRRNCVT AYAARSPAGE QGSEWILQDS STNPCECTVA  660
YAPVDAAALR PVIDGHDSSG VALLPCGFAV MPDGLEPRPS VITSRKGEEE SRAAAEAGGS  720
LVTVAFQALA SSSPTADDAL PPDSVEAVAG LASCALGNIK KAMRCEDC*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G326100.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankPNIAATA1e-121D25322.1 Panicum miliaceum gene for cytosolic aspartate aminotransferase, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701492.10.0homeobox-leucine zipper protein ROC9
SwissprotQ5JMF30.0ROC9_ORYSJ; Homeobox-leucine zipper protein ROC9
TrEMBLA0A368RB900.0A0A368RB90_SETIT; Uncharacterized protein
STRINGSi004904m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein