PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G320400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 240aa    MW: 24609.7 Da    PI: 10.1817
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G320400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.4e-20159210256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                         +y+GVr+++ +g+++AeIrdp     + +r +lg+fgtaeeAa+a++ a+ +++g+
  Seita.5G320400.1.p 159 HYRGVRRRP-WGKYAAEIRDPAR---HgARLWLGTFGTAEEAAAAYDSAAFRMRGA 210
                         7********.**********943...24**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.9E-31158218IPR001471AP2/ERF domain
CDDcd000183.58E-17159217No hitNo description
SuperFamilySSF541711.18E-22159219IPR016177DNA-binding domain
SMARTSM003801.4E-33159223IPR001471AP2/ERF domain
PfamPF008474.7E-14159209IPR001471AP2/ERF domain
PROSITE profilePS5103224.342159217IPR001471AP2/ERF domain
PRINTSPR003671.6E-10160171IPR001471AP2/ERF domain
PRINTSPR003671.6E-10183199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MPKGHTDHPR EQVVARHMSS TYMSLPLQRG SRDVATPAPP AGGDSAAHPY PRAVAGMDTS  60
LSLAGAGHGQ YLPLNENDSL DMVLFDVLRE ASGGGGGSAA PSVTTYQPLP ASSLLPPPLM  120
AIASSAARRG SCVGGVGCDN SRAAHPHAHA PKAAGTGRHY RGVRRRPWGK YAAEIRDPAR  180
HGARLWLGTF GTAEEAAAAY DSAAFRMRGA KALLNFPRSV AGCGATAAAK QAAGVTEAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-30157220366ATERF1
3gcc_A2e-30157220366ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G320400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276811e-94KJ727681.1 Zea mays clone pUT5609 AP2-EREBP transcription factor (EREB134) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969969.11e-171ethylene-responsive transcription factor 13-like
TrEMBLA0A368RAZ71e-170A0A368RAZ7_SETIT; Uncharacterized protein
STRINGPavir.Eb03148.1.p7e-83(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-23ethylene responsive element binding factor 1