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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.5G319000.1.p |
Common Name | LOC101774212, SETIT_002364mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
WRKY |
Protein Properties |
Length: 306aa MW: 33549.8 Da PI: 4.5565 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.5G319000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 95.7 | 3.2e-30 | 93 | 151 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ eHnhe
Seita.5G319000.1.p 93 SDSWTWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYTFEHNHE 151
69*************************998****************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 306 aa
Download sequence Send
to blast |
MSSAEDGYCS SDSPRAESPE ESQAAAAADA ESPRANKRER DLRDLHDLPA SPSSPLPAAK 60 RSRRSVEKRV VSVPLAECGD RPRAGSGEGP PPSDSWTWRK YGQKPIKGSP YPRGYYRCSS 120 SKGCPARKQV ERSRADPTVL LVTYTFEHNH ESPQPKSSSC HQQGKPSPRP PAPKPEPVVE 180 QAELGPEHEL PEPEAPEQEQ EQELEPEAEQ EEQKVVVSLV APETASTATV SPVAEEDESF 240 DFGWFDQYPT WHRSAAYAPL LPPEEWEREL QGEDALFAGL GELPECAVVF GRRRELSLEA 300 TAPCS*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KU058617 | 0.0 | KU058617.1 UNVERIFIED: Panicum miliaceum WRKY12-like gene, complete sequence. |