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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Seita.5G306000.1.p |
Common Name | LOC101760846, SETIT_002365mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
WRKY |
Protein Properties |
Length: 306aa MW: 31610.8 Da PI: 4.8528 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.5G306000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 91.5 | 6.4e-29 | 85 | 143 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+ver++ p++v++tY+ eHnh+
Seita.5G306000.1.p 85 TDSWAWRKYGQKPIKGSPFPRAYYRCSSNkGCPARKQVERDRAKPDTVIVTYSFEHNHS 143
69**************************99****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 306 aa
Download sequence Send
to blast |
MDGEWSDGAA ASSPTVSGGE GKAGPRGVPA EDSPGSPVSP AAAPSTAAPA ASRRRRSANK 60 RVVTLPLADV SGPRPKGVGE GNTPTDSWAW RKYGQKPIKG SPFPRAYYRC SSNKGCPARK 120 QVERDRAKPD TVIVTYSFEH NHSDAVPRAQ QNRQQAPKPK PQPAPPEPSE SPSSGSHDVA 180 ATACAGALVT TEGGAAAVEV HDDFRWLYDG VSVTSSTSPS DVDVAEEMLY GTMFFGATVG 240 APLPDEFGDV GGLFDGEGGG EEDAMFAGLG ELPECAMVFR RHAGDGLPMA GGEKVEQPAE 300 STAMS*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1wj2_A | 4e-15 | 86 | 142 | 19 | 74 | Probable WRKY transcription factor 4 |
2ayd_A | 4e-15 | 86 | 142 | 16 | 71 | WRKY transcription factor 1 |
2lex_A | 4e-15 | 86 | 142 | 19 | 74 | Probable WRKY transcription factor 4 |
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