PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G302100.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 745aa    MW: 84195.5 Da    PI: 6.9667
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G302100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.23e-18181071398
                         TT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3  13 sgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                         ++r+ +p+ f+ +         g   ++s t++l++ +g++W v+l  +  +gr++lt+GW++Fv+ n L +g+f+vF++dg+  f  +v+
  Seita.5G302100.1.p  18 TRRMEIPRGFLCHVpeerrrapGATVASSATVILKNAEGKTWLVEL--EEIDGRVFLTSGWSKFVEGNCLGQGEFLVFEYDGNIHF--RVS 104
                         45799*****9666988888886666799*****************..********************************998777..787 PP

                         EE- CS
                  B3  96 vfr 98 
                         vf 
  Seita.5G302100.1.p 105 VFG 107
                         775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-223109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-224109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.9446109IPR003340B3 DNA binding domain
CDDcd100171.16E-207106No hitNo description
SMARTSM010191.0E-179109IPR003340B3 DNA binding domain
PfamPF023625.2E-1518106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MEDQRRPRFF KVIVGDFTRR MEIPRGFLCH VPEERRRAPG ATVASSATVI LKNAEGKTWL  60
VELEEIDGRV FLTSGWSKFV EGNCLGQGEF LVFEYDGNIH FRVSVFGANA VEKAVWPSAS  120
GAPPTGNLGG GEQPCDISPS SKRRHSGDEL TETVKSLMRR HAQTVTTQRS TQGDEHISAQ  180
DTICFLDPHE VGCSKDELET SLSQKEPMED DKAKAIVEVM RTLHVDKLTV ELFCATLCLY  240
KWKVEAAAED INICRGKPQI LEQSLKQKLV LQFDFVKSQL RHFFPPDVDS ERIKKNNLEG  300
PNLSNQPLQC DLTVAPVKRR LVDEHKSCDL SHQHKRKTVK LQRGSPQPQT PRRSPRLAHL  360
NNTCNNTNEV LKERAEGLKP PQAAKDQVKD RVHKAHSLHE KPDNSLKAVR EETTGSLSQD  420
LRKLDPPQCE VGLSKENEHD QGETRKFLDH SNDRKNSEEQ MEINGVGTSE LFMSTDCIES  480
SPNNSGLTAY SRINELSFTW KHSQHANPIE KILLDIQRGN FVNTITHIQK VIQDDPSNVL  540
SADVIGAVVQ IGLLKCDLCL QDRNARKIVN ALLEYAKKVR EKHNFSIEMR KEEFSAKLQD  600
LLKWQLKELE TTYTSLESDY KKATTDSTIS FSTLEEHRKK LHAIKDGMKD SQQALMIRED  660
EIQKLAHKVA EHETICQKSL MEKVRVKTAL NSYQKTLGDV KEQLASTEPG FVDVDALVKV  720
EMDNMSTEIQ LSKGILLNIN FEKE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G302100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969801.10.0B3 domain-containing protein Os03g0120900
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A368RAE40.0A0A368RAE4_SETIT; Uncharacterized protein
STRINGSi005032m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.11e-14B3 family protein