PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G301200.1.p
Common NameSETIT_004558mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 284aa    MW: 30516.7 Da    PI: 4.5513
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G301200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.6e-141462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++eEd  l   v+++G+  +W + +++ g++R++k+c++rw++yl
  Seita.5G301200.1.p 14 RGPWSQEEDAVLRSFVERFGNAgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                        89******************99*************************97 PP
2Myb_DNA-binding39.51.3e-1269111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +T eEd l++ +    G++ W+ Ia++++ gRt++++k++w++
  Seita.5G301200.1.p  69 GGFTDEEDSLILSLYGDIGSK-WSVIASRLP-GRTDNDVKNYWNT 111
                         569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.283962IPR017930Myb domain
SuperFamilySSF466895.24E-2612109IPR009057Homeodomain-like
SMARTSM007171.1E-91364IPR001005SANT/Myb domain
PfamPF002494.5E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-221569IPR009057Homeodomain-like
CDDcd001673.70E-71662No hitNo description
PROSITE profilePS5129418.95463117IPR017930Myb domain
SMARTSM007171.5E-1167115IPR001005SANT/Myb domain
PfamPF002492.5E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-2270116IPR009057Homeodomain-like
CDDcd001673.14E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGRSPCCDKT KVKRGPWSQE EDAVLRSFVE RFGNAGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPELRHGG FTDEEDSLIL SLYGDIGSKW SVIASRLPGR TDNDVKNYWN TKLKKRYLAS  120
TGEGRPPSPP PPPPPPPASD DDSQSRHDEP PPPTPPPLAN LDDTEYTGGG AVDDDALLLK  180
SEQLYAELVG LIEQQSSSSA ATTPSSSSGT SSPTASSSGS CTGTTVWAPS MDVHDTTLLS  240
ESSSSLFDAY GAGDAFGAVY SFQDLLAASY DEITAVTQEL QYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141167107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G301200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2413701e-131AK241370.1 Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969789.10.0transcription factor MYB4
TrEMBLA0A368RAP10.0A0A368RAP1_SETIT; Uncharacterized protein
STRINGSi004558m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.16e-68myb domain protein 87