 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Seita.5G280700.1.p |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
Family |
RAV |
Protein Properties |
Length: 399aa MW: 41183.4 Da PI: 9.7529 |
Description |
RAV family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.5G280700.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 36.4 | 1.3e-11 | 79 | 127 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+ykGV + +grW A+I++ r +r++lg+f + +Aa+a++ a+++++g
Seita.5G280700.1.p 79 SRYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAGETDAARAYDVAAQRFRG 127
78****9888.8*********......44**********99*************98 PP
|
2 | B3 | 99 | 3e-31 | 214 | 305 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84
f+k+ tpsdv+k++rlv+pk++ae+h g + +++ l +ed g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v F++
Seita.5G280700.1.p 214 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLQAGDVVGFYR 304
89*******************************5556799*************************************************95 PP
- CS
B3 85 d 85
+
Seita.5G280700.1.p 305 S 305
4 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 399 aa
Download sequence Send
to blast |
MDSASSLVDD TSSGGGASTD KLRALAAAAA SAGAPLERMG SGASAVVDAA EPGAEADSAA 60 AAAAGAGAGV GVGGKLPSSR YKGVVPQPNG RWGAQIYERH QRVWLGTFAG ETDAARAYDV 120 AAQRFRGRDA VTNFRPLADA DPDAAAELRF LVSRSKAEVV DMLRKHTYFD ELAQNKRAFA 180 AAASAPTTSA LANAHSSPSP SPAAAAAAAR EHLFDKTVTP SDVGKLNRLV IPKQHAEKHF 240 PLQLPSAGGE SKGVLLNFED AGGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKGLQAGDVV 300 GFYRSAAAAG ADSKLFIACR LRPNGDVAAL TSPVVEVEPS SAPVAKAVRL FGVDLLSAPA 360 QAPAAAPAEA MAGCKRARDL AALPQAAFKK QLVELALV*
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 5e-52 | 208 | 323 | 2 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 5e-52 | 208 | 323 | 2 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | EU969519 | 0.0 | EU969519.1 Zea mays clone 331400 DNA-binding protein RAV1 mRNA, complete cds. |