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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.5G271800.1.p |
Common Name | LOC101759368, SETIT_004887mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
LBD |
Protein Properties |
Length: 92aa MW: 9962.81 Da PI: 9.1868 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.5G271800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 74.9 | 1.5e-23 | 4 | 90 | 1 | 79 |
DUF260 1 aCaaCkvlrrkCakd..Cvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgv 79
+C++C+vlr++C++ C+++p++ p++q++++ +++k++G++ +l+ll+a+p ++ r+ +++sl+yeA+ r+ +PvyG+v++
Seita.5G271800.1.p 4 SCNGCRVLRKGCSDTctCTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAAPADHlRPVVFRSLLYEACGRIVNPVYGSVSL 90
6************9855789************************************88877***********************976 PP
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU954764 | 1e-107 | EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds. |
GenBank | KJ728404 | 1e-107 | KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds. |