PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G269600.1.p

Common Name

LOC101775008, SETIT_001287mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 475aa MW: 50154.4 Da PI: 8.5543

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G269600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.4e-06	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H Seita.5G269600.1.p 73 FVCEICGKGFQRDQNLQLHRRGH 95 89*******************88 PP
2	zf-C2H2	11.7	0.00081	181	199	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + Seita.5G269600.1.p 181 DCGTVFSRRDSFITHRAFC 199 9**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.69E-8	72	95	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-5	73	95	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.614	73	95	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.012	73	95	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	75	95	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	116	146	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	9.69E-8	146	171	No hit	No description
SMART	SM00355	160	151	171	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MFQQELLQDR AEATDQDSSM SNLTSSASGG GPTAPPPPPA SGNKRKRSLP GNPDPDAEVV 60 ALSPATLMAT NRFVCEICGK GFQRDQNLQL HRRGHNLPWK LKQRGAGKDA PRKKVYVCPE 120 ASCVHHDPGR ALGDLTGIKK HFFRKHGEKK WKCDKCSKKY AVHSDWKAHS KICGTREYKC 180 DCGTVFSRRD SFITHRAFCD ALTEESAKAI GLNAMAPATA HHHPLLFSPP APQVMQHQVQ 240 DLAAPQEQHH QEVMQPPQAQ QQHCNNYAMK TEMPPWPAMP YDHPLLQPLC NAAATQSQSS 300 ATSALPPHLP AASAHLSATA LLLKAAQMGA TIGGAGAAGA GAHYTQMAGP ATSAPGSAAF 360 GLVLPGLNAQ QPAGGVMGGL ARTASHGRSS EGGGGDGGGG GGVDAMTRDF LGLRALSHRD 420 ILGLAGFDSS CMGAVAANAN MNCYEPQQHT QAHAQQHQQQ SSNEPSHGMG SHRP*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MFQQELLQDR AEATDQDSSM SNLTSSASGG GPTAPPPPPA SGNKRKRSLP GNPDPDAEVV  60
ALSPATLMAT NRFVCEICGK GFQRDQNLQL HRRGHNLPWK LKQRGAGKDA PRKKVYVCPE  120
ASCVHHDPGR ALGDLTGIKK HFFRKHGEKK WKCDKCSKKY AVHSDWKAHS KICGTREYKC  180
DCGTVFSRRD SFITHRAFCD ALTEESAKAI GLNAMAPATA HHHPLLFSPP APQVMQHQVQ  240
DLAAPQEQHH QEVMQPPQAQ QQHCNNYAMK TEMPPWPAMP YDHPLLQPLC NAAATQSQSS  300
ATSALPPHLP AASAHLSATA LLLKAAQMGA TIGGAGAAGA GAHYTQMAGP ATSAPGSAAF  360
GLVLPGLNAQ QPAGGVMGGL ARTASHGRSS EGGGGDGGGG GGVDAMTRDF LGLRALSHRD  420
ILGLAGFDSS CMGAVAANAN MNCYEPQQHT QAHAQQHQQQ SSNEPSHGMG SHRP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-34	147	213	3	69	Zinc finger protein JACKDAW
5b3h_F	6e-34	147	213	3	69	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G269600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956926	0.0	EU956926.1 Zea mays clone 1577561 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969529.1	0.0	protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-115	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	K3XHB6	0.0	K3XHB6_SETIT; Uncharacterized protein
STRING	Si001287m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-92	indeterminate(ID)-domain 7

Link Out ? help Back to Top
Phytozome	Seita.5G269600.1.p
Entrez Gene	101775008

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]