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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G268800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 418aa MW: 43666.4 Da PI: 6.5915 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80.3 | 4.2e-25 | 53 | 184 | 5 | 128 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgk 88 f+ hPtd elv+ yL++ ve+ +i+e+d+y ++P dL + ++ +e+ wyfF++ ++k+ +gkrk r+++ g W++ k Seita.5G268800.1.p 53 FQSHPTDLELVNSYLRPWVETGLKAG-PFIHEADVYAADPADLTRrfapaVAQDGERAWYFFTPLRHKSVRGKRKARTVAsgGGCWHNEAK 142 7779***************9988555.78**************84467755566888********************54423789****** PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +k+v++ +++++g ++++ f k++ + +t W+m e rl Seita.5G268800.1.p 143 SKPVFTGinGKRQIGHRQSFSFVKKDGGSRLRTGWLMMELRL 184 *****98889999**********99999999*******9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 33.712 | 49 | 211 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.59E-33 | 50 | 211 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-15 | 52 | 184 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MPQQVPRFHL QFGLSSPSPL PPPGPPRLPQ PAAAATAMVR SPSAASKPPC AAFQSHPTDL 60 ELVNSYLRPW VETGLKAGPF IHEADVYAAD PADLTRRFAP AVAQDGERAW YFFTPLRHKS 120 VRGKRKARTV ASGGGCWHNE AKSKPVFTGI NGKRQIGHRQ SFSFVKKDGG SRLRTGWLMM 180 ELRLLKDGAA GKEAQAEGAL GNLVLCKVYR SPRNPEPSDP APDPALKEEA TAADDDDESS 240 GATAEDDDDS SDAPEATAAA SGPTKKSDEE ESSEATVAAP SRHSKADDEI SGAGAAAAAP 300 GRKEKAAGDE DSAETSAAAP PARKRKAPDD ESSGAAAAPA PAPKRSSGSP GAPAPPSTEL 360 QCPHCGTHLV VTLKRPETKS ETEIAKDEPA PGASDAPPTR GDARGSSEKN LQFHHFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-12 | 53 | 209 | 19 | 166 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G268800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969524.2 | 0.0 | protein ATAF2 | ||||
TrEMBL | A0A368R932 | 0.0 | A0A368R932_SETIT; Uncharacterized protein | ||||
STRING | Si001850m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4011 | 29 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 2e-17 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G268800.1.p |