PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G265800.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HB-other
Protein Properties Length: 1849aa    MW: 205800 Da    PI: 5.1722
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G265800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.8e-1857111357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         kR   t++qle+Le+ ++ ++yps+++r eL++k+gL++rq ++WF+ rR k++k
  Seita.5G265800.1.p  57 KRMMKTPYQLEVLEKTYAVEQYPSEAMRLELSEKIGLSDRQLQMWFCHRRLKDRK 111
                         79999************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.15E-1640111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-1744111IPR009057Homeodomain-like
PROSITE profilePS5007116.1852112IPR001356Homeobox domain
SMARTSM003892.6E-1754116IPR001356Homeobox domain
CDDcd000861.20E-1457112No hitNo description
PfamPF000467.8E-1657111IPR001356Homeobox domain
SMARTSM005717.9E-20630689IPR018501DDT domain
PROSITE profilePS5082716.153630689IPR018501DDT domain
PfamPF027913.3E-17632686IPR018501DDT domain
PfamPF050666.2E-16806874IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156122.5E-910301072IPR028942WHIM1 domain
PfamPF156132.1E-1212091280IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1849 aa     Download sequence    Send to blast
MDATGAGGDG DGAGKAAPEA PAEAMTPPPA PAAPAPAPAS ASGAGVETSG SAEKPVKRMM  60
KTPYQLEVLE KTYAVEQYPS EAMRLELSEK IGLSDRQLQM WFCHRRLKDR KPPSKRQRRE  120
EEAALAPVMP PLPVLPTPAI PLASSDLMVG TPGMYNEPLH PAHSRRGAGR SSAVPRISMP  180
DIGRRYYEPT PIMMAQPVVP SVQLTPSELH VIHSVESQLG EPLREDGPVL GTDFDPVPPG  240
AFGAPIVPEQ QKQPVRSYDT KIFSRHDPKL LKASAFLPTM ETPFVPNSFT GKRKSTVGNP  300
PIVQPHVGSR AVHEYQFLPE QPSDTYERAS RSHYYDTPVE ISNSRISSLT SGSQLLHGSE  360
EAAPSYAFQG HTSGSGLLPQ PSRSQAFPAV PADHEMAQSN SNLNSVPVEG QFDISQVAAF  420
ENPLVSSERR VYHDEDASRV ERKRKHNEEA KIAKEVEAHE RRIRKELEKQ EMLNRKREEQ  480
RRKEMERLDR ERRKEEERLL RERQREEERF QREQRREHER MEKFLQKQSR RAEKQRQKEE  540
MRKEKEAARQ KAASERATAR RIAREYMELM EDERLELMEL AAQSKGLPST HLDSDTLQQL  600
DSFRGMLSQF PPQTVRLKVP FSIKPWIGSE DNVGKLLMVW RFLITFTDVL GLSPVTLDEF  660
VQSLHDYDSR LLGELHIALL KSIIKDIEDV ARTPSIALGV NPGGGHPQIV EGAYAWGFNI  720
RSWQRHLNLL TWPEILRQFA LSAGFGPQLK KRNVDDSYYR NDNEGHDGEN VISTLRNGSA  780
AVNAAALMKE RGYTHRRRSR HRLTPGTVKF AAFHVLSLEG SKGLTILEVA EKIQKSGLRD  840
LTTSKTPEAS IAAALSRDTK LFERTAPSTY CVKSPYRKDP ADSEAVLSAA REKIRAFQNV  900
LSDSEAEKEA DEAERDDDSE CDDNDDDPDG DDVNTEVEDD KDPLPAVKAQ DEVPITTEVG  960
DIKTEADSVG NALNSSSSFT KSAKGVPLPS LGKSIAADTG NESPLGASSA NHEVTPDNSE  1020
NTQIDESNQV EPWVRALAEG DYCDLSVEER LNALVALVGV ATEGNSIRGV LEERLELANA  1080
LKKQMWAEVQ LDKRRSKEEF ASRMQYNSYM GLKADMYQEN NATESTSTPA CNAYKENDGH  1140
MGTINNCEIL DQHSQGNAGS ISYERNGVGQ EMMATPDASS VQQYAYADKT RSQLKLYIGH  1200
RAEQLYVYRS LPLGQDRRGN RYWQFTTSAS PNDPGSGRIF FESKDGYWRV IDSEEAFDSL  1260
VAALDTRGSR EAQLHSMLQM IEPTFKEAIK RRGASIELST GRYPKNGATD MIRANCHSGS  1320
SNSTPFSVDS ATEYSDSFKV ELGRNDFEKT AISRRADAFL KWMWRECYNQ ELTCAMKYGV  1380
KRCSELLHSC NFCYQIYLAE ERHCSSCHKT FKSIYNFSEH TTQCEEKQRT DPNWKMQIVD  1440
YSVPIGMILL KLQLASIEAS VPSEALQPFW TDVYRKSWSV KLYATKSTAE VFQLLTVLEG  1500
AIRRDRLSSD FETTSECLNS QDVAPQNPLL PAGSASVLPW VPDTTAAVMV RMLDLDSAVS  1560
YTQNQKMERD GGGFMKFPSR YTVAKSKQET TPLEPPTGSD LYGGGRWLPG SGRRGRGRGS  1620
RGGSRGGRGR SRGGRVPRGV SSSSRVEFKD DGVASDKAPR KNARRGRARG RARGRGRRTV  1680
RSRQPSEGRA RSIPKANLLG SFSMLSSSKP ATVEESPRSS GADEWGLEAR MPYTEGDENS  1740
SGSQSEDNEE NGQPMDDDYE EQVPDYSIGY SSGSRPHGMM SMMDPESDEE DEDAEGDENA  1800
EEDDADHAVD DADIEMDEDD EIVDDGDGGE MNVDEDEDAT SYSSDYSE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
116661675RARGRARGRG
216661676RARGRARGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G265800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969494.10.0homeobox-DDT domain protein RLT2 isoform X1
TrEMBLA0A368R9720.0A0A368R972_SETIT; Uncharacterized protein
STRINGSi000028m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22833352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator