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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G263100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WOX | ||||||||
Protein Properties | Length: 534aa MW: 54998.9 Da PI: 7.4805 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 49.3 | 8.1e-16 | 71 | 131 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +p ++e+ ++ ++l ++ +++V++WFqNr+ + k+ Seita.5G263100.1.p 71 KPRWNPRPEQIRILEAIFNSgMINPPRDEIPRIRMRLqeygQVGDANVFYWFQNRKSRSKN 131 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 108.6 | 3.7e-35 | 70 | 132 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+ +P+++ei ri+++L+eyG+++d+NVfyWFQNrk+R+++k Seita.5G263100.1.p 70 PKPRWNPRPEQIRILEAIFNSGMINPPRDEIPRIRMRLQEYGQVGDANVFYWFQNRKSRSKNK 132 579**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.41E-11 | 65 | 136 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.977 | 67 | 132 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-6 | 69 | 136 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.33E-6 | 70 | 132 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-5 | 71 | 131 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.8E-13 | 71 | 130 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MASSFNNRHW PSMFRSKHAA EQWQPQPDIS SSPPSSLLSG GGNTTNTGGS CLNKHPSSGY 60 AGGEERTPDP KPRWNPRPEQ IRILEAIFNS GMINPPRDEI PRIRMRLQEY GQVGDANVFY 120 WFQNRKSRSK NKLRAAGAAR PCPARAPARA AAVTPPPPPP PAPPQLLTTT QQVQLLASPV 180 PQAAPTSSSS SSSDRSSGSS RPAAKRAAQA MSPTAAMDLL GPLAAACPQM YYQGQPVAPP 240 ASAPAHKVHD LVASDEPIFQ PWPQGCCLSA AELAAILGGQ YMHVPVPVQQ QPPAALPAGA 300 FLGLCNEVTE PAITGQRTCT TWGAGLGQYC PGGGAEHHQL GKNTDAAPAR EVAHEDATKL 360 GLLQYCFGDS TAVDATAGAA TMRDAAVTVA TVAATATTAR LTGLPASSAA PNGVVANYDL 420 MQLQGLAADG ALGAGATTTS TGAPVAVATA AVAGEQQEGG GVAALCITDS VTGRSVAHSV 480 AAARLDVRAQ FGEAAVLFRC AGERGLDLEH VPVDASGCTV QPLQHGAFYY VLV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G263100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055794 | 1e-130 | BT055794.1 Zea mays full-length cDNA clone ZM_BFb0196O06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969472.1 | 0.0 | WUSCHEL-related homeobox 7 | ||||
Swissprot | Q0JKK6 | 1e-120 | WOX7_ORYSJ; WUSCHEL-related homeobox 7 | ||||
TrEMBL | A0A368R949 | 0.0 | A0A368R949_SETIT; Uncharacterized protein | ||||
STRING | Si004249m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2666 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 1e-43 | homeobox-3 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G263100.1.p |