PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G261700.1.p
Common NameLOC101779888, SETIT_001816mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 386aa    MW: 40210 Da    PI: 7.5851
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G261700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1079.2e-34193250259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+
  Seita.5G261700.1.p 193 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSFQDPAVVITTYEGKHTHP 250
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-35177252IPR003657WRKY domain
SuperFamilySSF1182909.81E-30184252IPR003657WRKY domain
PROSITE profilePS5081132.489187252IPR003657WRKY domain
SMARTSM007743.4E-40192251IPR003657WRKY domain
PfamPF031061.1E-26193250IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSSGEFHFHD ELASLFAQRP APGPGEMMTQ QQQAPPASWF ADYLHAGAPG AGGMDYDLLC  60
RALDLPVPGD DVVKREMLVV DTGGGGFGAP TPTPSGGGTA PVTPNTTSSM SSSSSEAAGG  120
GGGGAGGFGA GEEDSLKKEE GEGEESKELG KGEDDADKSK KGAAAGKAKG KGEKRQRQPR  180
FAFMTKSEVD HLEDGYRWRK YGQKAVKNSP YPRSYYRCTT QKCPVKKRVE RSFQDPAVVI  240
TTYEGKHTHP IPATLRGSTH LLAAQLHHHH HAGAGGHHLG GVFPPPPLPQ MGAPPFGRAG  300
VLDVLGLLPP RGAHHGHTVP PAIGLASSRG MSGPMSTVAG ATTANASSSP PSLQMQHFMA  360
QDYGLLQDML PPPPFVHSNG GNIQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-28183253878Probable WRKY transcription factor 4
2lex_A5e-28183253878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G261700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0681160.0BT068116.1 Zea mays full-length cDNA clone ZM_BFb0045M20 mRNA, complete cds.
GenBankKJ7275430.0KJ727543.1 Zea mays clone pUT5403 WRKY transcription factor (WRKY95) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969457.10.0probable WRKY transcription factor 48
TrEMBLK3XIU30.0K3XIU3_SETIT; Uncharacterized protein
STRINGSi001816m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.19e-50WRKY DNA-binding protein 71