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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G259700.1.p | ||||||||
Common Name | SETIT_003539mg, SETIT_003541mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 10071.1 Da PI: 7.6812 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30 | 1.2e-09 | 17 | 61 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W++ E++l+ +a + +G g +W++++r mg +t+ +++ + Seita.5G259700.1.p 17 TWSKREEKLFEEALAYYGEGtpdRWHKVSRAMGGSKTADEVRRQY 61 7********************************99******9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.2E-8 | 14 | 67 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.22E-12 | 16 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.795 | 16 | 65 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.94E-6 | 17 | 61 | No hit | No description |
Pfam | PF00249 | 5.3E-8 | 17 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-4 | 17 | 61 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MSGSRSSSSH NVNMASTWSK REEKLFEEAL AYYGEGTPDR WHKVSRAMGG SKTADEVRRQ 60 YEILEDDVKL IESGRVPFPR YNTQGAWN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-22 | 14 | 85 | 1 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G259700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458271.1 | 4e-46 | protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 5e-23 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | K3XNR8 | 4e-59 | K3XNR8_SETIT; Uncharacterized protein | ||||
STRING | Si003539m | 7e-60 | (Setaria italica) | ||||
STRING | Si003541m | 7e-60 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1067 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 3e-23 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G259700.1.p |