PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G243800.1.p
Common NameSETIT_004979mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 299aa    MW: 33275.3 Da    PI: 9.87
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G243800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.12.2e-2579177191
                         EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                         f k+ltpsdv+k++rl +pkkfae++        +   +e++ l +ed ++g +W ++++ +++s++yvltkGW +F k+++L  gD+v F
  Seita.5G243800.1.p  79 FSKILTPSDVGKQNRLLIPKKFAEKYfpkisktkS--YREEQILAFEDsSTGLVWHFRFSLWRSSNTYVLTKGWPSFTKEKKLSNGDTVSF 167
                         88**************************8877432..336678999997889*************************************** PP

                         EE-SS.SEE. CS
                  B3  83 kldgr.sefe 91 
                         +++ + s+++
  Seita.5G243800.1.p 168 YRSADkSKGT 177
                         *987756664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-3268174IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-2677183IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-2177175No hitNo description
SMARTSM010194.8E-1779194IPR003340B3 DNA binding domain
PfamPF023621.6E-2279179IPR003340B3 DNA binding domain
PROSITE profilePS5086314.00179186IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MAFLATRLSR EMEVQMEKAA LCENPFHMVN PFLSRLYVSP WVSMSTPILP SGLSNSHGRL  60
GLWGAGMRGR QVIEIEFLFS KILTPSDVGK QNRLLIPKKF AEKYFPKISK TKSYREEQIL  120
AFEDSSTGLV WHFRFSLWRS SNTYVLTKGW PSFTKEKKLS NGDTVSFYRS ADKSKGTNCI  180
FIHIKPHVGI SSVPHHSAVP MFTPSGLLNE TDKCVCEGLG LGSGYRFEPT WKHLSFGSGG  240
LTPPITLMPQ PTMFPESMSL DNSMGRAQKR LRLFGVDIDV PPRASGDDSC NGWTNGVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-26761895117B3 domain-containing transcription factor NGA1
5os9_B1e-26761895117B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G243800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK3XSS70.0K3XSS7_SETIT; Uncharacterized protein
STRINGSi004979m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16167813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.18e-36B3 family protein