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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.5G242700.1.p |
Common Name | LOC101787005, SETIT_002050mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
C3H |
Protein Properties |
Length: 349aa MW: 37598.4 Da PI: 8.5459 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.5G242700.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 48.4 | 1.5e-15 | 273 | 298 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+ktelC+ + +tG C+yGd+C+FaHg
Seita.5G242700.1.p 273 FKTELCNKWEETGACPYGDQCQFAHG 298
79***********************9 PP
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2 | zf-CCCH | 17.5 | 7.4e-06 | 311 | 336 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt Cr +++ C+yG rC+F H+
Seita.5G242700.1.p 311 YKTQVCRMVLAGEVCPYGHRCHFRHS 336
99*********66**********998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0051511 | Biological Process | negative regulation of unidimensional cell growth |
GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis |
GO:0003729 | Molecular Function | mRNA binding |
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MQEALLSPAN AGSLRSAFEL KPFAFGDQRL ASPRYLNLAC GGTGGDDALF RCSSPFSPSF 60 GFSSPSPLAT SSVSLSPSSS ASLVDDCDDA AATDAATGHR LQLARLALQY QEVADRYELC 120 LARLADAADE AAALRRENAE LRAANGDLTR RLALLSGIGK QAAAAAIADE VRRLRFSEQK 180 AVPAAKERAQ PEKLAVLPKS ISVRSNDYLK MNQPNQAPAT PAANNRKPRA SNPTKPSSQR 240 VYIGDGGDKK GEEAKQQHAA GAMELEVYNQ GMFKTELCNK WEETGACPYG DQCQFAHGVA 300 ELRPVIRHPR YKTQVCRMVL AGEVCPYGHR CHFRHSLTSA ERLLLPRP*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT042147 | 0.0 | BT042147.1 Zea mays full-length cDNA clone ZM_BFb0146F09 mRNA, complete cds. |