PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

WRKY

Protein Properties

Length: 379aa MW: 39734.5 Da PI: 6.254

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G233100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	82.8	3.3e-26	194	252	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+s gC+++k vers p v+++tY +H h+ Seita.5G233100.1.p 194 SDPWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLIVTYMADHCHP 252 699*********************9988*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.4E-26	192	254	IPR003657	WRKY domain
SuperFamily	SSF118290	8.24E-24	193	254	IPR003657	WRKY domain
SMART	SM00774	1.6E-30	193	253	IPR003657	WRKY domain
PROSITE profile	PS50811	28.874	194	254	IPR003657	WRKY domain
Pfam	PF03106	5.5E-22	195	252	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MRGVLLLMAE HFNDWDLQAV VRSCGSVAHP DPPAGRGRPR AAAAPRAEAE AEAAGAAPAE 60 PTTPAAARGG EVPARAAPVA AAVQGHERAP PAVAAKGAAL LYDLEYLDLD HKPFLLPVTP 120 SPRGARAGDD GREREVMISF PAAAASTSGM QQQRAVPPGR KAGARTPRPK RSKKSQLKKV 180 VREMPVADGG ASSSDPWAWR KYGQKPIKGS PYPRGYYKCS SMKGCMARKL VERSPAKPGV 240 LIVTYMADHC HPVPTQLNAL AGTTRHKSSS AGTAAAAEDT ATSSPRSHEQ QGPSSVGRDG 300 STADAEDAAR CDVVDGNDKS TAMALEFGAE EIAAADDENE LWPAGMDLDE LLAPADDDFD 360 FEHVVDEEDG VLGRRLSL*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MRGVLLLMAE HFNDWDLQAV VRSCGSVAHP DPPAGRGRPR AAAAPRAEAE AEAAGAAPAE  60
PTTPAAARGG EVPARAAPVA AAVQGHERAP PAVAAKGAAL LYDLEYLDLD HKPFLLPVTP  120
SPRGARAGDD GREREVMISF PAAAASTSGM QQQRAVPPGR KAGARTPRPK RSKKSQLKKV  180
VREMPVADGG ASSSDPWAWR KYGQKPIKGS PYPRGYYKCS SMKGCMARKL VERSPAKPGV  240
LIVTYMADHC HPVPTQLNAL AGTTRHKSSS AGTAAAAEDT ATSSPRSHEQ QGPSSVGRDG  300
STADAEDAAR CDVVDGNDKS TAMALEFGAE EIAAADDENE LWPAGMDLDE LLAPADDDFD  360
FEHVVDEEDG VLGRRLSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-17	174	255	2	80	Disease resistance protein RRS1
5w3x_D	2e-17	174	255	2	80	Disease resistance protein RRS1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G233100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969219.1	0.0	probable WRKY transcription factor 65
TrEMBL	K3XIZ0	0.0	K3XIZ0_SETIT; Uncharacterized protein
STRING	Si001863m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4279	30	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	3e-35	WRKY family protein

Link Out ? help Back to Top
Phytozome	Seita.5G233100.1.p
Entrez Gene	101753693