PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G232700.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 273aa    MW: 30888 Da    PI: 7.5343
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G232700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.51.6e-11127213290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleHnH 87 
                         fY +YA+ +GF v++ ++kk        +r ++Cs+egk +  k ++  + r++++ +t+Cka+lk ++ +     +    +++ +l HnH
  Seita.5G232700.1.p 127 FYMRYAQLAGFGVKMCNKKKF-------SRVMRCSCEGKGDFYKGDEALRVRNKTTMKTKCKAHLKFTRVYdsegnEVDMIIENANLFHNH 210
                         9*************9987776.......8899*********9999999999****************998864332334567888899*** PP

                FAR1  88 ela 90 
                          l 
  Seita.5G232700.1.p 211 LLH 213
                         885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-7127212IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MNDMRVAVDV RNTEVPERSP RRSEPPQPGE RDTIDSCIKV PEMLESSSTR FRTPPTQIGC  60
QQGSNEDRTI TTGRQGVVFL PPDTLDANQM IASEEEIPPQ THNESLDPNM IPREGMSFHT  120
EAEAKAFYMR YAQLAGFGVK MCNKKKFSRV MRCSCEGKGD FYKGDEALRV RNKTTMKTKC  180
KAHLKFTRVY DSEGNEVDMI IENANLFHNH LLHTPLKTKK MRSHKSTEPV LYQIIDELQE  240
ASVSTQSIKN VLQNMHGGAE LVPITSRDIE NR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G232700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368R8830.0A0A368R883_SETIT; Uncharacterized protein
STRINGSi027404m1e-161(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76091043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-10FAR1-related sequence 5