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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G226900.4.p | ||||||||
Common Name | SETIT_000968mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 346aa MW: 37704.2 Da PI: 7.9988 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40.7 | 4e-13 | 77 | 101 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f+a+tG Ck+G++CkF+H++ Seita.5G226900.4.p 77 EPVCSFYAKTGKCKFGANCKFNHPM 101 789********************95 PP | |||||||
2 | zf-CCCH | 37.2 | 4.9e-12 | 151 | 176 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG+ C+F+H+ Seita.5G226900.4.p 151 PGEVDCSFYMKTGSCKYGSICRFNHP 176 57899********************9 PP | |||||||
3 | zf-CCCH | 34.7 | 2.9e-11 | 236 | 261 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C+f+++tG+Cky +CkF+H++ Seita.5G226900.4.p 236 GETVCDFYMKTGFCKYSQKCKFHHPM 261 6789********************95 PP | |||||||
4 | zf-CCCH | 35.5 | 1.7e-11 | 292 | 315 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C f++r+GtC+yG+ CkF H+p Seita.5G226900.4.p 292 EACAFYMRSGTCRYGAHCKFDHPP 315 78********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.4E-7 | 74 | 101 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-6 | 74 | 102 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.277 | 74 | 102 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-10 | 77 | 101 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-5 | 79 | 99 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.7E-6 | 150 | 177 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.788 | 150 | 178 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-9 | 152 | 176 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 154 | 178 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 156 | 175 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-6 | 234 | 261 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.732 | 234 | 262 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-7 | 235 | 263 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-9 | 236 | 261 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-5 | 239 | 260 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 288 | 315 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.065 | 288 | 316 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-6 | 291 | 316 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-9 | 292 | 315 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-5 | 292 | 313 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MERPANLTIH NGFQRVGFQT GKRSQTLKII ILSDQGNLIV LCKFNHPKEK VNALEAGTDN 60 EHSLIADSAI LPVRPSEPVC SFYAKTGKCK FGANCKFNHP MPSVIAKETI YTATTDAAAH 120 IGAADDLVPA KMHAPTAPSE AHNPKGLPIR PGEVDCSFYM KTGSCKYGSI CRFNHPYRPV 180 VDIALIAPLV QTTLPTPAPI ISAPMLNPAT NVLQSFDFHV THVPIEPVPI YPQRPGETVC 240 DFYMKTGFCK YSQKCKFHHP MNRSEPGANG NWDPEQPVTL TLAGLPRREG AEACAFYMRS 300 GTCRYGAHCK FDHPPPQEAI AKLQAAGKED EEKKEGEAKE GSVVP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G226900.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969171.1 | 0.0 | zinc finger CCCH domain-containing protein 8 | ||||
Swissprot | Q5ZDJ6 | 1e-123 | C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8 | ||||
TrEMBL | K3XJJ9 | 0.0 | K3XJJ9_SETIT; Uncharacterized protein | ||||
STRING | Si000968m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 5e-72 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G226900.4.p |
Publications ? help Back to Top | |||
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