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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G226900.2.p | ||||||||
Common Name | SETIT_000968mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 395aa MW: 42904 Da PI: 8.4754 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.1 | 1.1e-06 | 71 | 97 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++ ++ tC++ +rCkF+H++ Seita.5G226900.2.p 71 PGEPDCPYLVKSNTCRFKSRCKFNHPK 97 5789*********************96 PP | |||||||
2 | zf-CCCH | 40.5 | 4.7e-13 | 126 | 150 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f+a+tG Ck+G++CkF+H++ Seita.5G226900.2.p 126 EPVCSFYAKTGKCKFGANCKFNHPM 150 789********************95 PP | |||||||
3 | zf-CCCH | 37 | 5.8e-12 | 200 | 225 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG+ C+F+H+ Seita.5G226900.2.p 200 PGEVDCSFYMKTGSCKYGSICRFNHP 225 57899********************9 PP | |||||||
4 | zf-CCCH | 34.5 | 3.4e-11 | 285 | 310 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C+f+++tG+Cky +CkF+H++ Seita.5G226900.2.p 285 GETVCDFYMKTGFCKYSQKCKFHHPM 310 6789********************95 PP | |||||||
5 | zf-CCCH | 35.3 | 2e-11 | 341 | 364 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C f++r+GtC+yG+ CkF H+p Seita.5G226900.2.p 341 EACAFYMRSGTCRYGAHCKFDHPP 364 78********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.53 | 70 | 97 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.671 | 70 | 98 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-4 | 72 | 97 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.277 | 123 | 151 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-7 | 123 | 150 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 123 | 151 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-10 | 126 | 150 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-5 | 128 | 148 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.7E-6 | 199 | 226 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.788 | 199 | 227 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-9 | 201 | 225 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 203 | 227 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-4 | 205 | 224 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.732 | 283 | 311 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-6 | 283 | 310 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-7 | 284 | 312 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-9 | 285 | 310 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-5 | 288 | 308 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 337 | 364 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.065 | 337 | 365 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.8E-6 | 340 | 365 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-9 | 341 | 364 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.1E-5 | 341 | 362 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MASVPSTRTS ALSTLAWAPS TRTLAPSTRT LAPSTRTSAP STRALVLSIR ASVRGDPRKV 60 PNVEDYYPER PGEPDCPYLV KSNTCRFKSR CKFNHPKEKV NALEAGTDNE HSLIADSAIL 120 PVRPSEPVCS FYAKTGKCKF GANCKFNHPM PSVIAKETIY TATTDAAAHI GAADDLVPAK 180 MHAPTAPSEA HNPKGLPIRP GEVDCSFYMK TGSCKYGSIC RFNHPYRPVV DIALIAPLVQ 240 TTLPTPAPII SAPMLNPATN VLQSFDFHVT HVPIEPVPIY PQRPGETVCD FYMKTGFCKY 300 SQKCKFHHPM NRSEPGANGN WDPEQPVTLT LAGLPRREGA EACAFYMRSG TCRYGAHCKF 360 DHPPPQEAIA KLQAAGKEDE EKKEGEAKEG SVVP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G226900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969171.1 | 0.0 | zinc finger CCCH domain-containing protein 8 | ||||
Swissprot | Q5ZDJ6 | 1e-139 | C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8 | ||||
TrEMBL | K3XIP2 | 0.0 | K3XIP2_SETIT; Uncharacterized protein | ||||
STRING | Si000968m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-87 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G226900.2.p |
Publications ? help Back to Top | |||
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