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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.5G226900.2.p |
Common Name | SETIT_000968mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
C3H |
Protein Properties |
Length: 395aa MW: 42904 Da PI: 8.4754 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.5G226900.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 20.1 | 1.1e-06 | 71 | 97 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C++ ++ tC++ +rCkF+H++
Seita.5G226900.2.p 71 PGEPDCPYLVKSNTCRFKSRCKFNHPK 97
5789*********************96 PP
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2 | zf-CCCH | 40.5 | 4.7e-13 | 126 | 150 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++ C+f+a+tG Ck+G++CkF+H++
Seita.5G226900.2.p 126 EPVCSFYAKTGKCKFGANCKFNHPM 150
789********************95 PP
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3 | zf-CCCH | 37 | 5.8e-12 | 200 | 225 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
++++ C+f+++tG CkyG+ C+F+H+
Seita.5G226900.2.p 200 PGEVDCSFYMKTGSCKYGSICRFNHP 225
57899********************9 PP
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4 | zf-CCCH | 34.5 | 3.4e-11 | 285 | 310 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++ C+f+++tG+Cky +CkF+H++
Seita.5G226900.2.p 285 GETVCDFYMKTGFCKYSQKCKFHHPM 310
6789********************95 PP
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5 | zf-CCCH | 35.3 | 2e-11 | 341 | 364 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27
e C f++r+GtC+yG+ CkF H+p
Seita.5G226900.2.p 341 EACAFYMRSGTCRYGAHCKFDHPP 364
78********************96 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00356 | 0.53 | 70 | 97 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.671 | 70 | 98 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-4 | 72 | 97 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.277 | 123 | 151 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-7 | 123 | 150 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 123 | 151 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-10 | 126 | 150 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-5 | 128 | 148 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.7E-6 | 199 | 226 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.788 | 199 | 227 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-9 | 201 | 225 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 203 | 227 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-4 | 205 | 224 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.732 | 283 | 311 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-6 | 283 | 310 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-7 | 284 | 312 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-9 | 285 | 310 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-5 | 288 | 308 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 337 | 364 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.065 | 337 | 365 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.8E-6 | 340 | 365 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-9 | 341 | 364 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.1E-5 | 341 | 362 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 395 aa
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to blast |
MASVPSTRTS ALSTLAWAPS TRTLAPSTRT LAPSTRTSAP STRALVLSIR ASVRGDPRKV 60 PNVEDYYPER PGEPDCPYLV KSNTCRFKSR CKFNHPKEKV NALEAGTDNE HSLIADSAIL 120 PVRPSEPVCS FYAKTGKCKF GANCKFNHPM PSVIAKETIY TATTDAAAHI GAADDLVPAK 180 MHAPTAPSEA HNPKGLPIRP GEVDCSFYMK TGSCKYGSIC RFNHPYRPVV DIALIAPLVQ 240 TTLPTPAPII SAPMLNPATN VLQSFDFHVT HVPIEPVPIY PQRPGETVCD FYMKTGFCKY 300 SQKCKFHHPM NRSEPGANGN WDPEQPVTLT LAGLPRREGA EACAFYMRSG TCRYGAHCKF 360 DHPPPQEAIA KLQAAGKEDE EKKEGEAKEG SVVP*
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