PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G226900.1.p
Common NameLOC101768560, SETIT_000968mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 537aa    MW: 58604 Da    PI: 6.8627
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G226900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.67.4e-12164189227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++ C f++rt tCkyG+ CkF H++
  Seita.5G226900.1.p 164 REKDCAFYMRTRTCKYGEACKFDHPQ 189
                         6789********************97 PP
2zf-CCCH19.61.7e-06213239127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C++  ++ tC++ +rCkF+H++
  Seita.5G226900.1.p 213 PGEPDCPYLVKSNTCRFKSRCKFNHPK 239
                         5789*********************96 PP
3zf-CCCH39.96.8e-13268292327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C+f+a+tG Ck+G++CkF+H++
  Seita.5G226900.1.p 268 EPVCSFYAKTGKCKFGANCKFNHPM 292
                         789********************95 PP
4zf-CCCH36.48.5e-12342367126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ++++ C+f+++tG CkyG+ C+F+H+
  Seita.5G226900.1.p 342 PGEVDCSFYMKTGSCKYGSICRFNHP 367
                         57899********************9 PP
5zf-CCCH345e-11427452227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++  C+f+++tG+Cky  +CkF+H++
  Seita.5G226900.1.p 427 GETVCDFYMKTGFCKYSQKCKFHHPM 452
                         6789********************95 PP
6zf-CCCH34.82.8e-11483506427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         e C f++r+GtC+yG+ CkF H+p
  Seita.5G226900.1.p 483 EACAFYMRSGTCRYGAHCKFDHPP 506
                         78********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.06E-5160189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695162190IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-4162189IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9164189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4168188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.671212240IPR000571Zinc finger, CCCH-type
SMARTSM003560.53212239IPR000571Zinc finger, CCCH-type
PfamPF146081.1226238No hitNo description
SuperFamilySSF902292.35E-6265293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.277265293IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-7265292IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10268292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5270290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788341369IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-6341368IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9343367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5345369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4347366IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732425453IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6425452IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-7426454IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8427452IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5430450IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.065479507IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6479506IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5482507IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4483504IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-9483506IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MSDPLYPYSR GALPGGDGAL PPPRYSDLEV DLIAARYTGT PPPYPSSADV SAFDSHVGAF  60
DYGVGAFDSH VGAFDSGVGA FDSHVGAFDS HVGAFDSHIG AFDSRVGAFD SRFGARRSAE  120
ALYHQSFMGS HSTVAQNEAL YSPNTMAKRP RLESSLPIYP QRPREKDCAF YMRTRTCKYG  180
EACKFDHPQW VPEGGVPNWK EVPNVEDYYP ERPGEPDCPY LVKSNTCRFK SRCKFNHPKE  240
KVNALEAGTD NEHSLIADSA ILPVRPSEPV CSFYAKTGKC KFGANCKFNH PMPSVIAKET  300
IYTATTDAAA HIGAADDLVP AKMHAPTAPS EAHNPKGLPI RPGEVDCSFY MKTGSCKYGS  360
ICRFNHPYRP VVDIALIAPL VQTTLPTPAP IISAPMLNPA TNVLQSFDFH VTHVPIEPVP  420
IYPQRPGETV CDFYMKTGFC KYSQKCKFHH PMNRSEPGAN GNWDPEQPVT LTLAGLPRRE  480
GAEACAFYMR SGTCRYGAHC KFDHPPPQEA IAKLQAAGKE DEEKKEGEAK EGSVVP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G226900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969171.10.0zinc finger CCCH domain-containing protein 8
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLK3XGE80.0K3XGE8_SETIT; Uncharacterized protein
STRINGSi000968m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-131floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]