PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.5G207200.1.p

Common Name

LOC101775826, SETIT_001504mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 437aa MW: 46362.3 Da PI: 8.7595

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G207200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.9	4e-06	50	72	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H Seita.5G207200.1.p 50 FVCEICGKGFQRDQNLQLHRRGH 72 89*******************88 PP
2	zf-C2H2	11.8	0.00076	158	176	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + Seita.5G207200.1.p 158 DCGTVFSRRDSFITHRAFC 176 9**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.64E-8	49	72	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.2E-5	50	72	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.012	50	72	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.614	50	72	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	52	72	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	93	123	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	9.64E-8	123	148	No hit	No description
SMART	SM00355	160	128	148	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MSNLTSSASA GPDAPPVSGN KRKRSLPGNP DPDAEVVALS PATLMATNRF VCEICGKGFQ 60 RDQNLQLHRR GHNLPWKLKQ RGTGKEAPKK KVYVCPEASC VHHDPARALG DLTGIKKHFF 120 RKHGEKKWKC DKCSKKYAVH SDWKAHSKIC GTREYKCDCG TVFSRRDSFI THRAFCDALT 180 EESAKAIGFN AMAAAAPAHH HHPLLFSPPP QVMQQHQVQD LAALQENHHQ ELMQPPQPQQ 240 HCNYAMKTEM PPWPAMTYDH HAHPLLQPLC HAAAQSSATS APPPQLPAAS AHLSATALLQ 300 KAAQMGATIA GAGAGGAGAH YTQMAGPATS APGSATFGLG LPGLNAQQPA RGRGGEDGGG 360 GAGAGRGGDG MTRDFLGLRA FSHREILGLA GFDSSCMGAV AANADMGCYE PQQHAQAPAQ 420 QQQSSNEPWH GMGSHS*

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MSNLTSSASA GPDAPPVSGN KRKRSLPGNP DPDAEVVALS PATLMATNRF VCEICGKGFQ  60
RDQNLQLHRR GHNLPWKLKQ RGTGKEAPKK KVYVCPEASC VHHDPARALG DLTGIKKHFF  120
RKHGEKKWKC DKCSKKYAVH SDWKAHSKIC GTREYKCDCG TVFSRRDSFI THRAFCDALT  180
EESAKAIGFN AMAAAAPAHH HHPLLFSPPP QVMQQHQVQD LAALQENHHQ ELMQPPQPQQ  240
HCNYAMKTEM PPWPAMTYDH HAHPLLQPLC HAAAQSSATS APPPQLPAAS AHLSATALLQ  300
KAAQMGATIA GAGAGGAGAH YTQMAGPATS APGSATFGLG LPGLNAQQPA RGRGGEDGGG  360
GAGAGRGGDG MTRDFLGLRA FSHREILGLA GFDSSCMGAV AANADMGCYE PQQHAQAPAQ  420
QQQSSNEPWH GMGSHS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-33	124	185	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-33	124	185	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G207200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU956926	0.0	EU956926.1 Zea mays clone 1577561 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969020.1	0.0	protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-115	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	K3XHY2	0.0	K3XHY2_SETIT; Uncharacterized protein
STRING	Si001504m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	5e-94	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Seita.5G207200.1.p
Entrez Gene	101775826

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]