PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G204500.1.p
Common NameSETIT_003753mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 405aa    MW: 41568.4 Da    PI: 6.2666
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G204500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-07328368954
                         HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          r+RR+ri +++  L++l+P  a      K++ a++L +A +Y++ L
  Seita.5G204500.1.p 328 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 368
                         69******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-13325380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-11325373No hitNo description
SMARTSM003534.0E-13325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-11327377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-5328368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDHSFSDMIL SESAWSGGGG DGGAVLLPPE VGVVEGGSMT VLERLVLDEA LAAAILELQG  60
IQVPAACAGK VPAAAGGGVV GETVAFAAMA TPTPAYADVD ADVLQRQQHR HRHHGAMGMP  120
PDYDLTPATA AVAVTTVPAA FANAAAAVDS NGGGLVDGPV FSSNDTDAPA VAAMTATTSQ  180
QQCEEGKGGG RRQRRPNRKR KAAADPSSVP AQESTLCSLL ASSTTASEGG IQIAFNTSGG  240
AQAKRAKPSL SGSGSSSISF DGRGGAGGAS GGADDPMYEP DTEALAQVKE MIYRAAAMRP  300
VSLGSEDAGE RPRRRNVRIS SDPQTVAARQ RRERISERLR VLQKLVPGGA KMDTASMLDE  360
AANYLRFLKS QVRELQTLDR RNYAANASNV NITAAAAPPP WLGH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328333RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G204500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031411e-149AP003141.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0002B05.
GenBankAP0032961e-149AP003296.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0697C12.
GenBankAP0149571e-149AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-149CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969001.10.0transcription factor bHLH87
TrEMBLA0A368R7160.0A0A368R716_SETIT; Uncharacterized protein
STRINGSi003753m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-35bHLH family protein