 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Seita.5G196100.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
Nin-like |
| Protein Properties |
Length: 361aa MW: 39764.1 Da PI: 6.1233 |
| Description |
Nin-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.5G196100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | RWP-RK | 84.4 | 1e-26 | 208 | 257 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
++i +++l++yF++pi+ AA+e++v+lTvLK++CR++GI+RWPhRk+ksl
Seita.5G196100.1.p 208 DHIGFDELRRYFYMPITRAAREMNVGLTVLKKRCRELGIARWPHRKMKSL 257
6899********************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 361 aa
Download sequence Send
to blast |
MAMVPYCDGD ADWYHFPPLC PPSPLALLSE GESYYDLPIF PPPPAAGDHQ FFSNQLPPVP 60
VDSATVGLDD ALLQPLGDID LEAFDNADEH KAPHHGRHTM IVPAGQHAVG QEYAGVDVVD 120
DADEKPMAPH HGRHTMVGQE YAGVDGVIVV DDADQKPMAM VDCFLPGANN AFESAMPPPQ 180
PSLPLPARGR RSVDHRSAPA PGGKTRLDHI GFDELRRYFY MPITRAAREM NVGLTVLKKR 240
CRELGIARWP HRKMKSLKSL ILSVQEMGTG MNPAAVQQEL AALETYCALM EENPAIELTE 300
RTKKLRQACF KESYKRRRAA AVNVVDHIFN FDEHQFHHQL PPPPSPSSAE RHGSGSFFGY 360
*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP003933 | 2e-66 | AP003933.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0066C06. |
| GenBank | AP004258 | 2e-66 | AP004258.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24. |
| GenBank | AP014957 | 2e-66 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012609 | 2e-66 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
