PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G160200.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 449aa    MW: 46645.9 Da    PI: 5.1234
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G160200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.72e-151152344
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                        i n + r  tf kR++g+ KKA ELSvLC+++va++++  +g
  Seita.5G160200.1.p 11 IGNRRVRAGTFGKRKEGLKKKADELSVLCGVDVALVVATADG 52
                        678899999****************************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.57E-17181IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.572152IPR002100Transcription factor, MADS-box
SMARTSM004327.7E-15162IPR002100Transcription factor, MADS-box
CDDcd002666.02E-20281No hitNo description
PRINTSPR004046.6E-8323IPR002100Transcription factor, MADS-box
PfamPF003195.5E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MGRRKVSMGL IGNRRVRAGT FGKRKEGLKK KADELSVLCG VDVALVVATA DGNGGGADVW  60
ESNEGVLARY RTLGAEARAK HTHRAYLEGE LGKGEAKLAR VRQGGPDGLA RWDKALDGVA  120
TAEEARQLLD AVDAAIRATD ERRRKLGMPV DDDGEDGGAG IVLEGIAPLN FAAADEYLLH  180
APGGGGGDAN DGQAMWGSNG IQFQQGGAAN MQQAGYGFQP CITTSSSGAG MESYHLLMAP  240
DMYGNVDNDN SRLADAYQPC DAGAMQHGYG FQCARAGYFG VPSGYQMQQV QPNLPMMWSA  300
DESRHAMVPL EYPSADAGLN NCADTAVAYG GQGVGGRSFA MGAGGNFVKS PPALSLAMGT  360
GGGNFINAPP AAPSYTMGGS GDNFTNATPA QPLAISYGGD LTSAGRYAAP WHAAAPMPQR  420
AGGDQKPGIE QLHYLSDLED TQLHLWGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G160200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815545.10.0developmental protein SEPALLATA 3-like
TrEMBLA0A368R5L80.0A0A368R5L8_SETIT; Uncharacterized protein
STRINGSi003942m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.13e-13AGAMOUS-like 82