PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G123300.1.p
Common NameLOC101784352, SETIT_005180mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 273aa    MW: 29473 Da    PI: 8.5721
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G123300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-0789114127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ykt+lC  f + G C y d C+FaHg+
  Seita.5G123300.1.p  89 YKTKLCEKFEA-GKCAYEDGCTFAHGE 114
                         9**********.*************96 PP
2zf-CCCH19.51.7e-06154176325
                         S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                          + C  f+  GtC+yGdrC++aH
  Seita.5G123300.1.p 154 GKVCFEFRDRGTCHYGDRCTYAH 176
                         5678889999************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-1584120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-887118IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-488114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0888115IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-589114IPR000571Zinc finger, CCCH-type
SMARTSM003560.057151178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272151179IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6152178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-6155177IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4155176IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MERDEGKAAA AAAGAGARAS RWEVSPDGVI VLPAGSAAPR PPPPHARQQR ERETERERER  60
EREREQQNNP GAGVFGEQPH PELPEKVFYK TKLCEKFEAG KCAYEDGCTF AHGEAELRPP  120
MPVPPALVLH RRKTPPPPPP PPAAEAPFGG YYGGKVCFEF RDRGTCHYGD RCTYAHATAA  180
EVAEMRYPGG PRSVEHALRN APPFARASFS PGGTARSSST TSSYAPAAAA RAFPSALPPP  240
APVGEDGRKL SRLEILSRKK TRGIYGDWPE QD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G123300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971711.10.0zinc finger CCCH domain-containing protein 1
TrEMBLK3XTC40.0K3XTC4_SETIT; Uncharacterized protein
STRINGSi005180m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.17e-10C3H family protein