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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Seita.5G123300.1.p |
| Common Name | LOC101784352, SETIT_005180mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
C3H |
| Protein Properties |
Length: 273aa MW: 29473 Da PI: 8.5721 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.5G123300.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 22.9 | 1.5e-07 | 89 | 114 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
ykt+lC f + G C y d C+FaHg+
Seita.5G123300.1.p 89 YKTKLCEKFEA-GKCAYEDGCTFAHGE 114
9**********.*************96 PP
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| 2 | zf-CCCH | 19.5 | 1.7e-06 | 154 | 176 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25
+ C f+ GtC+yGdrC++aH
Seita.5G123300.1.p 154 GKVCFEFRDRGTCHYGDRCTYAH 176
5678889999************* PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 1.7E-15 | 84 | 120 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.88E-8 | 87 | 118 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.5E-4 | 88 | 114 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.08 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.1E-5 | 89 | 114 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.057 | 151 | 178 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.272 | 151 | 179 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.66E-6 | 152 | 178 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.0E-6 | 155 | 177 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.1E-4 | 155 | 176 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 273 aa
Download sequence Send
to blast |
MERDEGKAAA AAAGAGARAS RWEVSPDGVI VLPAGSAAPR PPPPHARQQR ERETERERER 60
EREREQQNNP GAGVFGEQPH PELPEKVFYK TKLCEKFEAG KCAYEDGCTF AHGEAELRPP 120
MPVPPALVLH RRKTPPPPPP PPAAEAPFGG YYGGKVCFEF RDRGTCHYGD RCTYAHATAA 180
EVAEMRYPGG PRSVEHALRN APPFARASFS PGGTARSSST TSSYAPAAAA RAFPSALPPP 240
APVGEDGRKL SRLEILSRKK TRGIYGDWPE QD*
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