PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Seita.5G122600.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 809aa MW: 88858.6 Da PI: 7.8477

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.5G122600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.7	1.1e-14	243	325	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkr..tfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn Y+ e+GF +r s+s++ k+ gei+++ fvC + g+++ +kk + + gC a +++ +++d+ w++++++ +HnH++ Seita.5G122600.1.p 243 DYYNLYSWEMGFGIRYSSSQSYKKRGEIYRNmvSFVCVCGGTPDAGSKK---------SIKQGCPAFVRLLRTDDDGWYIKEFVADHNHKM 324 59***************999999999875338*****998877.........999**************************99 PP FAR1 90 a 90 + Seita.5G122600.1.p 325 S 325 6 PP
2	FAR1	49.6	1.3e-15	509	591	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrt..fvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn Y+ e+GF +r s+s++ k+ gei++++ fvC + g+++ +kk + + gC a +++ +++d+ w++++++ +HnH++ Seita.5G122600.1.p 509 DYYNLYSWEMGFGIRYSTSQSYKKRGEIYRNRvsFVCACGGTPDAGSKK---------SIKQGCPAFMRLLRTDDDGWYIKEFVADHNHKM 590 59**************9999999999875433*****998877.........999**************************99 PP FAR1 90 a 90 + Seita.5G122600.1.p 591 S 591 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.2E-12	243	325	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	9.4E-13	509	591	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.6E-12	732	787	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 809 aa Download sequence Send to blast
MGDATDVRKW MRQGSFPAPA AGPHQHLSPP QRACVENPLC DTTSGAELEA RAPPPSSMLS 60 GGAVRTVPGC RGEEAATQGR AHVTRCPPSL RSGVRPQAPA VHATTVSAAP VPPSRTAAAT 120 MTPGATSVPP YRPIHRGESS ATAPPSAVVA SGESEPIVGG EACNGSSKGS AVDGKTASSC 180 SGPRKRGVKR SWKDGVGADS RAFVPGRISP LEEALRCYGD RGAGPIIAPR AGLEFDSCEE 240 AFDYYNLYSW EMGFGIRYSS SQSYKKRGEI YRNMVSFVCV CGGTPDAGSK KSIKQGCPAF 300 VRLLRTDDDG WYIKEFVADH NHKMSETCAE ISCWKSHRQI DPHTKELVKN LRANNVSLTE 360 VSCILSSFFG NNNASAVTKR ALRSLTVQNN SEKVEGDVHQ TIENDVQINR EAEDDVQKTI 420 EVFNRLHEED EGFANVVDLD EGGKIKTMMW TNGKSRRWKN GVGPDSRKFV PGRISPLEEA 480 LRRYGDRGAG PIIAPRAGLE FDSCEEAFDY YNLYSWEMGF GIRYSTSQSY KKRGEIYRNR 540 VSFVCACGGT PDAGSKKSIK QGCPAFMRLL RTDDDGWYIK EFVADHNHKM SKTCGEQSCW 600 KSHRQIDPHT KEVVKNLRAN NVSLTEVSCI LSSFFGNNNA SAVTKRALRS LTVQINREKV 660 EGNVHKTIED NVQINREVED DVQKTIEVFN RLHEEDEGFA NVVDLDEGGK IKAMMWTNGK 720 SRHDYLCFGD AITFDTTYRT NKYNMPFGLF VGANKHFQSV IFAGVLMLDE SIKSFEWGFH 780 TICGSNGRQG TKDDTYRPVQ CDGSCIGQ*

Sequence ? help Back to Top

Protein Sequence Length: 809 aa Download sequence Send to blast

MGDATDVRKW MRQGSFPAPA AGPHQHLSPP QRACVENPLC DTTSGAELEA RAPPPSSMLS  60
GGAVRTVPGC RGEEAATQGR AHVTRCPPSL RSGVRPQAPA VHATTVSAAP VPPSRTAAAT  120
MTPGATSVPP YRPIHRGESS ATAPPSAVVA SGESEPIVGG EACNGSSKGS AVDGKTASSC  180
SGPRKRGVKR SWKDGVGADS RAFVPGRISP LEEALRCYGD RGAGPIIAPR AGLEFDSCEE  240
AFDYYNLYSW EMGFGIRYSS SQSYKKRGEI YRNMVSFVCV CGGTPDAGSK KSIKQGCPAF  300
VRLLRTDDDG WYIKEFVADH NHKMSETCAE ISCWKSHRQI DPHTKELVKN LRANNVSLTE  360
VSCILSSFFG NNNASAVTKR ALRSLTVQNN SEKVEGDVHQ TIENDVQINR EAEDDVQKTI  420
EVFNRLHEED EGFANVVDLD EGGKIKTMMW TNGKSRRWKN GVGPDSRKFV PGRISPLEEA  480
LRRYGDRGAG PIIAPRAGLE FDSCEEAFDY YNLYSWEMGF GIRYSTSQSY KKRGEIYRNR  540
VSFVCACGGT PDAGSKKSIK QGCPAFMRLL RTDDDGWYIK EFVADHNHKM SKTCGEQSCW  600
KSHRQIDPHT KEVVKNLRAN NVSLTEVSCI LSSFFGNNNA SAVTKRALRS LTVQINREKV  660
EGNVHKTIED NVQINREVED DVQKTIEVFN RLHEEDEGFA NVVDLDEGGK IKAMMWTNGK  720
SRHDYLCFGD AITFDTTYRT NKYNMPFGLF VGANKHFQSV IFAGVLMLDE SIKSFEWGFH  780
TICGSNGRQG TKDDTYRPVQ CDGSCIGQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.5G122600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004968375.1	0.0	uncharacterized protein LOC101776624 isoform X2
TrEMBL	A0A368R5Q2	0.0	A0A368R5Q2_SETIT; Uncharacterized protein
STRING	Si005043m	1e-174	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	3e-31	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Seita.5G122600.1.p