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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.5G119400.1.p |
Common Name | LOC101761379, SETIT_002632mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
LBD |
Protein Properties |
Length: 257aa MW: 26252.8 Da PI: 7.7667 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.5G119400.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 141.6 | 2.5e-44 | 29 | 128 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
+CaaCk+lrrkC ++Cv+apyfp e+p+kfanvhk+FGasnv+kll++l +++reda+ssl+yeAear++dPvyG+vg i+ lq+q+++l+
Seita.5G119400.1.p 29 PCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLPHQREDAVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQ 119
7****************************************************************************************** PP
DUF260 92 aelallkee 100
+el+++++e
Seita.5G119400.1.p 120 KELDAAHAE 128
****99987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
Protein Sequence Length: 257 aa
Download sequence Send
to blast |
MASPSSTSNN SALSPAASSG ATTPGAGAPC AACKFLRRKC LPGCVFAPYF PPEEPQKFAN 60 VHKVFGASNV TKLLNELLPH QREDAVSSLA YEAEARVKDP VYGCVGAISV LQRQVHRLQK 120 ELDAAHAELL RYACGDVSGI PTALPVSGGA APRLSAAMPS PGQFATSATA AAGMYSGRTR 180 LGLVDGIAPP PPPAGCYFMR SNNVVMSSSP GADVAPVLPY ASMANWAVNA MSATTTATSG 240 SESIVLDHKE GGDSSM*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JQ951639 | 0.0 | JQ951639.1 Loudetia sp. MCE-2012 Ramosa2 (ra2) gene, partial cds. |