PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G114000.1.p
Common NameLOC101776505, SETIT_002375mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 304aa    MW: 32830.1 Da    PI: 8.9478
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G114000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.3e-11555146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                        ++rWT eE+  l  +v+++G g+W+tI +          R+  ++k++w++
  Seita.5G114000.1.p  5 KQRWTSEEEAALRTGVAKHGVGNWRTILNDPElssilCYRSNVDLKDKWRN 55
                        79******************************999*978**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.939161IPR017930Myb domain
SuperFamilySSF466891.08E-15259IPR009057Homeodomain-like
SMARTSM007178.9E-8459IPR001005SANT/Myb domain
PfamPF002494.6E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-13556IPR009057Homeodomain-like
CDDcd116601.01E-19657No hitNo description
Gene3DG3DSA:1.10.10.103.8E-19120194IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.47E-17121196IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.4E-13122187IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150425.399124192IPR005818Linker histone H1/H5, domain H15
PfamPF005386.4E-11125185IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGAPKQRWTS EEEAALRTGV AKHGVGNWRT ILNDPELSSI LCYRSNVDLK DKWRNMNVTV  60
TASSSRDKAR SAVKKTRAGP KNNDQPAAIS TVTSDADDEI VDVKPIASVS SEAWNTSNSK  120
KSQSHSRLDN IIMEAIKNLN EPTGSHRTTI ANYIEEQYWP PSDFDHLLSA KLKDLAASGK  180
LIKVNRKYRI APSSPRLEGR SPKMLLLEEV QKEPLKLGID ASKSLTRSQV DAELARIATM  240
TPEAAAAAAA RAVAEAEAIM AEAEAAAREA EVAEAEAQAA QAFAEAALLT LKNRNATKLM  300
AQG*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G114000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968284.10.0single myb histone 5
RefseqXP_004968285.10.0single myb histone 5
RefseqXP_022682871.10.0single myb histone 5
SwissprotC0HIA31e-140SMH6_MAIZE; Single myb histone 6
TrEMBLK3XKF20.0K3XKF2_SETIT; Uncharacterized protein
STRINGSi002372m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-59telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]