PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G104900.1.p
Common NameSETIT_003867mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 171aa    MW: 18639.9 Da    PI: 4.925
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G104900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.91.9e-113581555
                 AP2  5 GVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                        GV++ + +grWvAeI+ p     +     +l +f+t e+Aa+a+  a  +++g
  Seita.5G104900.1.p 35 GVWRVP-WGRWVAEICNP-----HlaVCKWLSTFDTTEDAARAYNVATVEFRG 81
                        998888.********998.....778******************888766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.3843289IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-153391IPR016177DNA-binding domain
PRINTSPR003673.2E-53344IPR001471AP2/ERF domain
PfamPF008478.3E-63475IPR001471AP2/ERF domain
SMARTSM003803.6E-133595IPR001471AP2/ERF domain
CDDcd000181.88E-183591No hitNo description
Gene3DG3DSA:3.30.730.107.5E-193590IPR001471AP2/ERF domain
PRINTSPR003673.2E-57191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MPHAVRTGVP AATASSSLRQ GPAVVAAEWE SESIGVWRVP WGRWVAEICN PHLAVCKWLS  60
TFDTTEDAAR AYNVATVEFR GCCAKLNFPD DAALVLTSTY QHHHHLPQPL LESLHETCGS  120
NASSSVDVAL VVAAPTGQHD TRPVPKEQDI WDTLNEFMMM DDGSFWSPMP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G104900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954022.13e-61ethylene-responsive transcription factor ERF112
TrEMBLK3XPN91e-123K3XPN9_SETIT; Uncharacterized protein
STRINGSi003867m1e-124(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.11e-17ERF family protein