PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G096700.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family RAV
Protein Properties Length: 293aa    MW: 32430.7 Da    PI: 9.5122
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G096700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.84.8e-123782455
                 AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        kGV   + +grW A+I++      + r++lg+f   e Aa+a++ a+++++g
  Seita.5G096700.1.p 37 KGVVLQP-TGRWGAQIYED-----HERVWLGTFPDQETAARAYDVAALRYRG 82
                        8999999.9******9993.....4*************************98 PP
2B388.17.3e-28146238185
                         EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                         f+k+ tpsdv+k++r+v+pkk+ae+h        +g   +++ l +ed +g++W+++++y+ +s++yvltkGW +Fv+++gL++gD v F+
  Seita.5G096700.1.p 146 FEKAVTPSDVGKLNRFVVPKKHAERHlpplraaeEGTAGKGVVLAVEDGEGKVWRFRYSYWESSQSYVLTKGWIRFVREKGLRAGDAVAFS 236
                         89*****************************999888889**************************************************9 PP

                         E- CS
                  B3  84 ld 85 
                         + 
  Seita.5G096700.1.p 237 RW 238
                         43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-213596IPR001471AP2/ERF domain
PROSITE profilePS5103220.0473590IPR001471AP2/ERF domain
PfamPF008472.5E-73682IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-163691IPR016177DNA-binding domain
PRINTSPR003672.7E-63647IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-193791IPR001471AP2/ERF domain
CDDcd000183.35E-193791No hitNo description
PRINTSPR003672.7E-67292IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.3E-35142255IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.93E-29143240IPR015300DNA-binding pseudobarrel domain
CDDcd100178.49E-29144237No hitNo description
PfamPF023627.9E-25146238IPR003340B3 DNA binding domain
PROSITE profilePS5086313.38146254IPR003340B3 DNA binding domain
SMARTSM010193.6E-19146253IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MESVTGAAAA LATVDSSQES GGDDNDDDLP RQPLRLKGVV LQPTGRWGAQ IYEDHERVWL  60
GTFPDQETAA RAYDVAALRY RGRGAVTNFP ARRGADDEAR QLAFLAAHSK SEIVDMLRNQ  120
TYADELRHGV RRGVPALPAW ARVPLFEKAV TPSDVGKLNR FVVPKKHAER HLPPLRAAEE  180
GTAGKGVVLA VEDGEGKVWR FRYSYWESSQ SYVLTKGWIR FVREKGLRAG DAVAFSRWTF  240
GPEEQLLIDC RKKPKNKADA IAVQAPIVKL FGVDIAVGRR GNGLWRVLEE ET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-4114526013124DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G096700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971642.10.0AP2/ERF and B3 domain-containing protein Os01g0141000
SwissprotQ9AWS71e-102Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A368R3090.0A0A368R309_SETIT; Uncharacterized protein
STRINGPavir.Ea00485.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-86related to ABI3/VP1 2