PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G088000.1.p
Common NameLOC101759745, SETIT_002412mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LBD
Protein Properties Length: 298aa    MW: 31798 Da    PI: 7.9805
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G088000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.62.2e-294106198
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C+++ ++     p++q +++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg++++++++
  Seita.5G088000.1.p   4 SCNGCRVLRKGCSDNCAIRLCLqwirsPDAQGNATVFLAKFYGRAGLINLIAAGPEHVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNWK 94 
                         6*************************99*************************************************************** PP

              DUF260  87 leqlkaelallk 98 
                         l+q+++e +l++
  Seita.5G088000.1.p  95 LCQSAVESVLRG 106
                         *****9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381551.8E-871294IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089115.853109IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-224102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCA IRLCLQWIRS PDAQGNATVF LAKFYGRAGL INLIAAGPEH  60
VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWKLCQSAV ESVLRGMPIA PPPPAATAVP  120
PLRTCDIRHV ARREADDHGA VAAAAGLHRL ANSSRGQFKR SAGAHRSAGS GSGIELVFSQ  180
PSAAASMLVD VRMAQPLNWA PRRQPSHEYS GSHDAVPETD SNTSVDTVDV SHVSQSEPEP  240
RREIDDDGRA DGLDLTLGLP TTTVHKTEPS DVDDGLQPCH RGELAKLGLA IADSRAR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G088000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1005021e-141FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968068.10.0LOB domain-containing protein 42
SwissprotQ9M8865e-69LBD41_ARATH; LOB domain-containing protein 41
TrEMBLK3XKI90.0K3XKI9_SETIT; Uncharacterized protein
STRINGSi002412m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.19e-64LOB domain-containing protein 41