PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G084500.1.p | ||||||||
Common Name | SETIT_004657mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 295aa MW: 30783.3 Da PI: 9.1244 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.9 | 1.8e-05 | 83 | 102 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk+F ++ L H+r Seita.5G084500.1.p 83 PCTECGKRFASWKALFGHMR 102 6******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 5.3E-4 | 82 | 104 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.492 | 82 | 109 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.71E-7 | 83 | 104 | No hit | No description |
Pfam | PF13912 | 2.1E-8 | 84 | 106 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 84 | 104 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 84 | 104 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.71E-7 | 201 | 228 | No hit | No description |
Pfam | PF13912 | 7.9E-11 | 206 | 230 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.2 | 206 | 228 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.369 | 206 | 228 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 208 | 228 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MATPVQPAAS RSPPRPPPPP LPLPPPPPHH DTTLTLALAL PPPAFACALS PRPLQARRPR 60 PDGAASSSSF PRVRSSPTGD TLPCTECGKR FASWKALFGH MRCHPERQWR GITPPPHLRH 120 DHHHQQQQQH AVGAPPLAVA AAAAGQQFTV QEREIAASLL MLAGARTPGV GKGKKGVLAS 180 SSAKKESCST PASSPTAAAP PKCDDHKCSV CARGFATGQA LGGHKRCHWE KACAEVMAVA 240 TPSSCSPLLA TSEEVVAATT LDLNLPPPGT MLALPWKSDE DGSLNAALDL KLGY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G084500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU975188 | 1e-45 | EU975188.1 Zea mays clone 483820 nucleic acid binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682354.1 | 0.0 | zinc finger protein ZAT3 | ||||
TrEMBL | A0A368R2M1 | 0.0 | A0A368R2M1_SETIT; Uncharacterized protein | ||||
STRING | Si004657m | 1e-165 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11612 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 8e-31 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G084500.1.p |