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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.5G062000.1.p |
Common Name | LOC101778808, SETIT_005179mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
GeBP |
Protein Properties |
Length: 407aa MW: 42522.6 Da PI: 4.8821 |
Description |
GeBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.5G062000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF573 | 98.6 | 5.6e-31 | 85 | 184 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqki 88
lfqrlw++e e+++L+G++df+a++g+ +++ d+ fye +++++sf+++ksql+eK+rrLKkK++ + ++ a++g ++f+++h+ i
Seita.5G062000.1.p 85 LFQRLWTDEEELLILRGFLDFTARRGTtfASHQyDTGPFYEEIRRRLSFDFTKSQLIEKLRRLKKKYRVCAARvAAQGAAFAFRSAHEGAI 175
79************************99877778*************************************998899************** PP
DUF573 89 felskkiWg 97
+++++ iW+
Seita.5G062000.1.p 176 YDVARHIWR 184
********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 407 aa
Download sequence Send
to blast |
MADDHHPLAA AASSSAGDDD EGTDTDASNS DLANHRDPPP LTDATSAPPT PPAAAASAPE 60 PTGAVPPPPP PQPQSAGAAE DSRRLFQRLW TDEEELLILR GFLDFTARRG TTFASHQYDT 120 GPFYEEIRRR LSFDFTKSQL IEKLRRLKKK YRVCAARVAA QGAAFAFRSA HEGAIYDVAR 180 HIWRPAFKRG EGAAAGDASD EDDINPAAAA AAAALPNATE DGGGGSASAP TPRGRGGRRV 240 RRRTAQELEA PALPATSALV LNDVVQEPLA VPVENLTPAF APPNPVQAPI VSPMAATPSP 300 MTATAGGAAE EVVRTILSPL LREFISSVAV AGQAGLGLGL GMGFGGIGGF DILGLGFGAA 360 GPNPAMPGDE KWRQQQILEL EVYLKRIELV REQVTAALQE LRSSEG*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT065406 | 1e-166 | BT065406.1 Zea mays full-length cDNA clone ZM_BFb0145O21 mRNA, complete cds. |
GenBank | JX428457 | 1e-166 | JX428457.1 Zea mays subsp. mays clone pUT3052 GBP21 GeBP type transcription factor mRNA, partial cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G04930.2 | 1e-27 | DNA-binding storekeeper protein-related transcriptional regulator |