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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Seita.5G056200.1.p |
| Common Name | LOC101757057, SETIT_001303mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family |
C3H |
| Protein Properties |
Length: 473aa MW: 49692.4 Da PI: 7.2578 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.5G056200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 32.6 | 1.3e-10 | 60 | 86 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C +++rtG C +G+rC+++H++
Seita.5G056200.1.p 60 PGEADCGYYLRTGACGFGERCRYNHPR 86
57899********************96 PP
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| 2 | zf-CCCH | 37.3 | 4.7e-12 | 110 | 135 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++ C +f++tGtCk+G++Ck++H++
Seita.5G056200.1.p 110 GQPVCEYFLKTGTCKFGSNCKYHHPK 135
7899********************96 PP
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| 3 | zf-CCCH | 39.8 | 7.3e-13 | 155 | 180 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++C+++++tG+Ck+G++CkF+H++
Seita.5G056200.1.p 155 GEKECSYYMKTGQCKFGSTCKFHHPE 180
7899********************96 PP
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| 4 | zf-CCCH | 39.2 | 1.2e-12 | 308 | 334 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++++C++++rtG Ck+G++Ck++H++
Seita.5G056200.1.p 308 PGQPECQYYMRTGDCKFGATCKYNHPR 334
5789*********************96 PP
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| 5 | zf-CCCH | 32 | 2.1e-10 | 357 | 380 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27
+C ++a++G+C+yG Ck+ H++
Seita.5G056200.1.p 357 QPCAYYAQNGYCRYGVACKYDHPM 380
69********************95 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 13.676 | 59 | 87 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.8E-5 | 59 | 86 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.7E-8 | 61 | 86 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.96E-5 | 63 | 87 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 0.001 | 65 | 86 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.7E-7 | 108 | 135 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.577 | 108 | 136 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 7.4E-10 | 110 | 135 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.94E-7 | 111 | 137 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.1E-6 | 113 | 137 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.7E-6 | 153 | 180 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.812 | 153 | 181 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.5E-10 | 155 | 180 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.36E-6 | 156 | 180 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 159 | 179 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.4E-6 | 307 | 334 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.263 | 307 | 335 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.6E-10 | 309 | 334 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.62E-5 | 311 | 335 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.2E-4 | 313 | 334 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.0E-6 | 353 | 380 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.892 | 353 | 381 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.03E-5 | 354 | 382 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.7E-8 | 357 | 380 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.8E-5 | 357 | 378 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 473 aa
Download sequence Send
to blast |
MEPPHAEEAA AAGGGGGGGE GGRASPGTGL EGPMLRLGLD GGGEGEDGER EADARLPERP 60
GEADCGYYLR TGACGFGERC RYNHPRDRGG TEFGGGTKNG AAPDFPERQG QPVCEYFLKT 120
GTCKFGSNCK YHHPKQDGSV QSVILNNNGF PLRPGEKECS YYMKTGQCKF GSTCKFHHPE 180
FGGIPVTPGI YPPLQSASVP SPHTYAPLAN WQMGRSPVVP GSYMPGSYTP MMLSSGMVPL 240
QGWSPYPASV NPVASGGAQQ TVQAGPLYGI GHHGSSATIA YGSPYMPYSS STGQSSNNHQ 300
EHGFPERPGQ PECQYYMRTG DCKFGATCKY NHPRDWSAAK SNYMFSPLCL PLRPGAQPCA 360
YYAQNGYCRY GVACKYDHPM GTLGYSSSAL PLSDMPIAPY PLSFSVATLA PSPSSPEYIS 420
TKDPSMNQVA SPVAAPEPVG AVLPKGGFPP DTIMRTQTST TGVGSSSPGG GR*
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| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU968830 | 0.0 | EU968830.1 Zea mays clone 324384 zinc finger CCCH type domain-containing protein ZFN-like 1 mRNA, complete cds. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Friedrichs G,Fikri M,Guo Y,Temps F
Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
J Phys Chem A, 2008. 112(25): p. 5636-46
[PMID:18512897] - Ning H,Gong C,Li Z,Li X
Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
J Phys Chem A, 2015. 119(18): p. 4093-107
[PMID:25868004]
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