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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G024000.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | G2-like | ||||||||
Protein Properties | Length: 303aa MW: 31549.5 Da PI: 8.3783 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 71.8 | 1e-22 | 77 | 130 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rl+W+p+LH +Fv+a ++L G + A+P +il+ mk++g+t+++v+SHLQkYR Seita.5G024000.4.p 77 KDRLVWSPKLHGKFVRACNEL-GVKDAVPMKILRRMKINGITRAQVASHLQKYRG 130 68*******************.999*****************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-23 | 75 | 134 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-15 | 76 | 133 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.5E-19 | 77 | 129 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MADGGGNNGN GAASTETGTT TVVESHPPQQ AVTPKKPKKR KKSESSDEQS SGATVPGGCT 60 APDGDGGRDP KQEANKKDRL VWSPKLHGKF VRACNELGVK DAVPMKILRR MKINGITRAQ 120 VASHLQKYRG SLSKRKDEET SGNRGDATTV MVVHHTPLDA ASPSPPATAT APPPAIPPSV 180 PPSPQSPLET PDTMCQPPNG HSSDHAVAAA NLHHQQLQLL LLPPVQHQHC FPPPPLLHQV 240 GAVTITEEKT PSMMQQQAAV APASQHGPTL VGVEQAAGAP VPASAAENGP PVSMLRGQHD 300 ET* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 34 | 40 | KKPKKRK |
2 | 36 | 42 | PKKRKKS |
3 | 37 | 41 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G024000.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682941.1 | 0.0 | uncharacterized protein LOC101786344 isoform X1 | ||||
Refseq | XP_022682942.1 | 0.0 | uncharacterized protein LOC101786344 isoform X1 | ||||
Refseq | XP_022682943.1 | 0.0 | uncharacterized protein LOC101786344 isoform X1 | ||||
TrEMBL | A0A368R0G4 | 0.0 | A0A368R0G4_SETIT; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59570.1 | 4e-18 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G024000.4.p |