PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G018500.1.p
Common NameSETIT_001509mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 417aa    MW: 44618.1 Da    PI: 7.1156
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G018500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.84.5e-19121532128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya..tgk...........rkn 75 
                         p G+rF Pt+ el    L  k++g k   + ++++++v i++++P++L +k+++  e++ +yfFs+r  k++                r+ 
  Seita.5G018500.1.p  12 PCGYRFVPTNLELF-SLLSDKIDGAKlrPPHNSIFHDVPILDYHPEELCEKFRKdaEHRCIYFFSRRVFKKQgtG-GgaiipegkkepRPV 100
                         89***********9.99*******99765555779*************86555511444559**99987776550.245555555666999 PP

                 NAM  76 ratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ra++ g+Wka+g  k ++     +g + g   t+vfy   ++   k++W mhe+++
  Seita.5G018500.1.p 101 RAARGGTWKASGGGKLLCWPrnkGGFVAGRVVTMVFY---DHGVDKSNWGMHEFTV 153
                         99***********999987644455569999******...344458********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-227164IPR003441NAC domain
PROSITE profilePS5100522.47711169IPR003441NAC domain
PfamPF023654.1E-1212152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MAGGFLTKHG FPCGYRFVPT NLELFSLLSD KIDGAKLRPP HNSIFHDVPI LDYHPEELCE  60
KFRKDAEHRC IYFFSRRVFK KQGTGGGAII PEGKKEPRPV RAARGGTWKA SGGGKLLCWP  120
RNKGGFVAGR VVTMVFYDHG VDKSNWGMHE FTVPFEDLAL YRIYILRSGD MEIENAAGSS  180
SLQMLANAND HFSALSTAVA PCLQIQPSWG VFAAGASMTS QTPPQQHPGV DHAHYYHHQP  240
AFGAASAGAA AQQQAHNVSV HGAGLPGYSC QFASPPAPAP MPPAAANPAA HQAPATAAQA  300
HGTRQEAGHF GATHSPCPPP AEQHATATTE PAHAQFADRF KPVEEAAPPQ LEDIVLTAED  360
YRMGMADADE YLGAGIPDWD LRFAPFDRRA QLALHDGGDP GVGGPGVRRT AGDGRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G018500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967494.10.0NAC domain-containing protein 48
TrEMBLA0A368R0600.0A0A368R060_SETIT; Uncharacterized protein
STRINGSi001509m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.18e-11NAC domain containing protein 47